Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03959 ATGGCGCTGGCAGCTGCTGTTGGTGAAGCTTTTCTCTCTGGTTTCATTGAAGTTGTCCTTGATAGGCTTGCTTCTCCTGAGCTTGTTGACTTGATCCGTGGAAAGAAAGTTGACTTCAACTTGGTTCAAAGGTTGAAGAACACTCTCTATGCTGTTGAAGTTGTGCTGAATGATGCTGAACAGAAACGGTTTAAAGACTCTGCTGTTAACAAATGGCTTGATGACCTCAAAGATGCTGTTTATGTTGCTGATGACATTTTGGATACCATCTCTACCAAAGCTGCTATTTCCAAGAACAACAAGGTGAGTACTACTACTAACTACTTCTCTCGCTTTTTCAACTCTGAAGAGAGAGATATGGTTTGTAAGTTGGAAAATATTGTTGCTAGACTTGAATACATTCTCAAATTCAAAGATATTCTTGGTCTTCAACATATTGCTACTGACCACCACTCTTCTTGGAGAACTCCATCCACCTCTCTAGTAGATGTTGGATCTAACATATTTGGTAGGGATCAAGACAAAGAGGCCATACTCAAACTACTGttagatgatgataatgatgatgctAAGATTTCTGTGATCCCCATAGTTGGTATGGGTGGAGTGGGAAAAACCACTTTGGCCCAATCTGTTTACAACCATGACAGTGTCAAGCAGAAGTTTGATGTTCAAGCATGGGCTTGTGTTTCTGACCATTTCGATGAATTCAAGGTTACAAAGGCAGTCATGGAGGCAGTTACTAGAAGTGCTTGTAATCTAAATAACAAAGAGTTGCTTCATCTTGATTTGAAGGAAAAACTGACCGGAAAAAAGTTCTTAATTGTTTTGGATGATGTTTGGACCGAGGATGATGATGGTTGGAATTCTCTTTTAAGGCCTCTTCAATACGGAACTACGGGAAGTAAAATTCTTGTAACAACCCGTATTGAAAAAGTTGCATCTATGGTTCAAACTTCTCAAACTTACCATCTTGAGCAATTATCCGATGAAGATTGTTGGTCCGTGTTTGCAAACCGTGCTTGTCTTTCTTCAAAACAATCCACCGAGAATATGGAGCTCCACAAAATTGGAAAAGAGATTGTTAGAAAATGTAAGGGATTGCCTTTAGCAGCACAATCACTTGGAGGCTTGTTGCGACGTAAACATGACATCAAGGATTGGAATAATATACTGAATAGCAACATTTGGGAAAATGAGAGTAAGATCATTCCAGCACTAAGAATTAGTTATCATTATCTCCCTCCATATTTGAAACGTTGCTTTGTTTATTGTTCGTTGTATCCTGAGGATTACGAATTTGATAAAGACGATTTGATCTTGTTGTGGATGGCCGAAGATCTTTTACAGCCTCCGAAAAATGGGAAGACTTTAGAAGAAGTTGGTTCTGGGTATTTTGATGACTTAGCTTCAAGATCATTTTTTCAACGTTCCAGAAATGAGAGTTTTGTGATGCCTGATCTGGTGCATGATTTAGCAACATTACTAAGTGGAGAGTTCTATTTAAGAAGAGAAGAACTTGCTAATGAAACAAAGATTGGTACCATGACTGTCATTTATCATTTAGCGAGTTCTGTGATCCAGTCCATGAAAACTATGATGTTTTTGGCCGAGCAAAACATCTTAGGACGTTTCTTGCAATCAATTATAGAAGATCTTGATTCATTGCCTGATTTGATAGGTGAACAGATCCATTTGCGATATTTGGATCTCTCTGAGACAAATATAACGACATTACCAGAGTCATTGTGTAATCTTTATAATCTTCAAACATTGAAGTTGTACTATTGTGAAGAACTAACCAGACTTCCCAATGACATGCAAAATCTTGTAAATTTGCGCCATCTTGATATCAGGAAATGTTATACGTTAGAAGAGATGCctagagaaatgaagaaattaacaaatttgCAACATTTGAGTTGCTTTCATGTGGGCAAGCATGGAGAGACAGGGATCAAGGAATTGGGAGCACTTTCAAATCTTCAAGGATCACTTTCCATTACAAAATTAGAGAATGTTATCAACATGTCCGAAGCATCTGAGGCGAAAATAATGGATAAGAAGTACCTTGAGGAATTATCATTGTCATGGTCTGAAGATGCTAAGGACCACTTTACAGATTCACAATGTGAGATGGATATGCTTGGCAAGTTACAGCCTACCAAGAACCTGAAAAGGCTAAATGTACATAGATACAGAGGCACAAGATTTCCAGAATGGGTTGGAAATTCTTCCTACCACAATTTGACTGAGTTACATTTGGTTAATTGTCAGAATTGTTGTATCCTTCCTCCACTTGGACAATTAAGCTCTCTCAATATATTGACCATGAAAAAAATGAGTATGCTGGAGACTGTTGGATATGAATATGGTGATTCATTTTCAGGGACACTCTTTCCCTCTCTCGAATGGTTGGAGTTTGATGACATGCCATGTTGGGAAATGTGGCATCATTCCCATGATCCGGATGATTCTTTTCCTGTCCTGAAGTCTCTTCAGATTATTGATTGTCCCAGATTAAAGGGAGATTTGCCATCTCATCTTCCTATGCTGGAAACAATTAAGATTGATCGATGCAACCAGCTTGGCTCTTCTCTCCCAAAGGCTTTTTCCATCCGAGAGTTAAAGATATTTGAAAGCAATAAAGTAGCCTTGCATGAACTGCCCCATTCATTGGAAGTATTAAGAATTAAAGGAACAGAGattctTTCAAATCTTGTTAGTATTGAAATTAGAAACTGCCCCAAATTTGTATCATTCCCAAGAGAAGGATTGTCTGCACCCAACTTGAAAATATTGCGTATCGACAACTGCAGAACAAAAGATATTTCTGTAACCACCACCAACGGTGATGATTCTGctggaaaagaaaaaactcaaacTGAAACCGCAGAACAGATTAAGGATAAAACACTGCAAGCTGAAAAGAAAAGACAGCTTTGGATCGATAATGATTATGTttgcaaaaactatatcattaTTGGTCTGGAAGATGATCTGTATGATTATTACAGAACTTATGATACTGCTAGTGATGTATGGGAggctttgaaaaagaaatatgacACCGAAGAGGCGGGTGTGAAAAAATATGCAGTGAGCCGGTATCTGAAATACCAGATGGTTGATGAAAGGTCAGTGGAGGTACAGTCTCATGAACTCCAGAAGATTGCTCATGAGATAATAACTGAAGGTATGCCCCTCAATGAACAATTTCAGATTGCTGTTATTATTGACAAGCTGCCCCCTGGAtggaaagattttaaaaatcagcttcgtcataaaacaaaagaattttccaTCGAGGGTCTGATTACTCGTCTTCGTATTGAAGAAGAGTCACGGAAACAGGatcagaaagaagaagagaaaattcTGATTGTctccaacaataacaaaaagaaattcggTGCGGCTCTGAAGCCTACGGGCAAACCTTTAAAGAATCAGAACCGCAATCAAAACCGAATTAAGAATGGGAACCCTTCTAAGGCCCCATATGCTAGGCAACAACAACAGCCTCCACCTCCTAGAAATGATACTGGTGAATTCCTATGTTTCAACTGTTGGAAACCAGGTCATTTGGCAAAGAAATGCAGAGGAATGAAAAGGCCGAAACCTGCTCATTTAAATGCTCAAGTGAATGTAACCGATGAGGCTTACACTTGTATGATCACCGAAATTAATATGGTCGGTGGTACTGATGGATGGTGGATAGATACTGGCGCCACACGCCATGTCTGTTATGAACGTGCTATGTTTAAAACATACACGAGTGCTGAAAATAAGAAAGTGCAGATGGGAAATGCCCACACTTCAGATGTTGCTGGTGTTGGAGATGTTgtgtga 3852 0.3718 MALAAAVGEAFLSGFIEVVLDRLASPELVDLIRGKKVDFNLVQRLKNTLYAVEVVLNDAEQKRFKDSAVNKWLDDLKDAVYVADDILDTISTKAAISKNNKVSTTTNYFSRFFNSEERDMVCKLENIVARLEYILKFKDILGLQHIATDHHSSWRTPSTSLVDVGSNIFGRDQDKEAILKLLLDDDNDDAKISVIPIVGMGGVGKTTLAQSVYNHDSVKQKFDVQAWACVSDHFDEFKVTKAVMEAVTRSACNLNNKELLHLDLKEKLTGKKFLIVLDDVWTEDDDGWNSLLRPLQYGTTGSKILVTTRIEKVASMVQTSQTYHLEQLSDEDCWSVFANRACLSSKQSTENMELHKIGKEIVRKCKGLPLAAQSLGGLLRRKHDIKDWNNILNSNIWENESKIIPALRISYHYLPPYLKRCFVYCSLYPEDYEFDKDDLILLWMAEDLLQPPKNGKTLEEVGSGYFDDLASRSFFQRSRNESFVMPDLVHDLATLLSGEFYLRREELANETKIGTMTVIYHLASSVIQSMKTMMFLAEQNILGRFLQSIIEDLDSLPDLIGEQIHLRYLDLSETNITTLPESLCNLYNLQTLKLYYCEELTRLPNDMQNLVNLRHLDIRKCYTLEEMPREMKKLTNLQHLSCFHVGKHGETGIKELGALSNLQGSLSITKLENVINMSEASEAKIMDKKYLEELSLSWSEDAKDHFTDSQCEMDMLGKLQPTKNLKRLNVHRYRGTRFPEWVGNSSYHNLTELHLVNCQNCCILPPLGQLSSLNILTMKKMSMLETVGYEYGDSFSGTLFPSLEWLEFDDMPCWEMWHHSHDPDDSFPVLKSLQIIDCPRLKGDLPSHLPMLETIKIDRCNQLGSSLPKAFSIRELKIFESNKVALHELPHSLEVLRIKGTEILSNLVSIEIRNCPKFVSFPREGLSAPNLKILRIDNCRTKDISVTTTNGDDSAGKEKTQTETAEQIKDKTLQAEKKRQLWIDNDYVCKNYIIIGLEDDLYDYYRTYDTASDVWEALKKKYDTEEAGVKKYAVSRYLKYQMVDERSVEVQSHELQKIAHEIITEGMPLNEQFQIAVIIDKLPPGWKDFKNQLRHKTKEFSIEGLITRLRIEEESRKQDQKEEEKILIVSNNNKKKFGAALKPTGKPLKNQNRNQNRIKNGNPSKAPYARQQQQPPPPRNDTGEFLCFNCWKPGHLAKKCRGMKRPKPAHLNAQVNVTDEAYTCMITEINMVGGTDGWWIDTGATRHVCYERAMFKTYTSAENKKVQMGNAHTSDVAGVGDVV 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03959 1283 SUPERFAMILY Retrovirus zinc finger-like domains 1171 1210 IPR036875 GO:0003676|GO:0008270
Tsu08g03959 1283 Pfam gag-polypeptide of LTR copia-type 982 1118 - -
Tsu08g03959 1283 PANTHER DISEASE RESISTANCE PROTEIN RP 618 921 IPR044974 GO:0006952
Tsu08g03959 1283 PANTHER DISEASE RESISTANCE PROTEIN RP 36 618 IPR044974 GO:0006952
Tsu08g03959 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 425 IPR027417 -
Tsu08g03959 1283 Pfam Rx N-terminal domain 11 101 IPR041118 -
Tsu08g03959 1283 Gene3D - 155 324 IPR027417 -
Tsu08g03959 1283 MobiDBLite consensus disorder prediction 1147 1179 - -
Tsu08g03959 1283 PANTHER OS05G0414200 PROTEIN 618 921 - -
Tsu08g03959 1283 PANTHER OS05G0414200 PROTEIN 36 618 - -
Tsu08g03959 1283 Gene3D - 327 409 IPR042197 -
Tsu08g03959 1283 ProSiteProfiles Zinc finger CCHC-type profile. 1187 1201 IPR001878 GO:0003676|GO:0008270
Tsu08g03959 1283 SMART c2hcfinal6 1186 1202 IPR001878 GO:0003676|GO:0008270
Tsu08g03959 1283 Gene3D Ribonuclease Inhibitor 524 950 IPR032675 -
Tsu08g03959 1283 Pfam NB-ARC domain 172 394 IPR002182 GO:0043531
Tsu08g03959 1283 SUPERFAMILY L domain-like 552 940 - -
Tsu08g03959 1283 Gene3D - 16 128 - -
Tsu08g03959 1283 Gene3D - 410 495 IPR036388 -
Tsu08g03959 1283 Coils Coil 42 62 - -
Tsu08g03959 1283 MobiDBLite consensus disorder prediction 1137 1181 - -
Tsu08g03959 1283 PRINTS Disease resistance protein signature 267 281 - -
Tsu08g03959 1283 PRINTS Disease resistance protein signature 365 379 - -
Tsu08g03959 1283 PRINTS Disease resistance protein signature 194 209 - -
Tsu08g03959 1283 PRINTS Disease resistance protein signature 608 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03959 Tsu-Chr8 57903341 57908576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03959 192 376 WRKY Transcription Factor Family AT5G45050 26.667 1.52e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03959 - - cam:101497042 1232.24