Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03956 ATGCCAACtccttcttcatcatcttcttcttctatttggGTTCTGTCTAACATTAAACTTCAATTCTTTACTCGTATCAGACGGTTTCTTCAATCCAAAGCAACCCGAAAGCGCTGTGACGCTTCCAATTGtttaaaaagagaagaaaatattCAACATAGAGATGAACAGAACAAGGTTGAAAAGATTGAAACAGTTGAAGTTATGGAGAATCTTAAAGAGGAGGAGGTGGAGGAAACTGAAATTTTGCTGCAGAAGACAGTGAAAATGCTTCATTTTGGAAGCTGGGAAGAGAAGGAAGTAGCTGCAAAAGAGATTGAAAGTTTAGTTAAAGAAGATGTTAAAGTTAGAAAGTTGATAACTGAACTTGGGGTGGTGCCGGTTTTAGTATCTATGGTGGCGTCACAGGTGGCTAGTCGCCGGAGTGCAGGGTTGACGGCGTTGATTCACCTAGCTGATGGAACTTACACGAACAAGGCTTTGATAGTGGAGGCAGGAATATTATCCAATCTACCTAAGAAAATTGACCTTATAGATGAGTCAACCATAAGTGAGTTTGCAGAATTActtttatcattatcatcacttgCAAATACTCAATTCCCTTTTGCTTCATTAGATTTTATTCCATTTCTCAAAGACATTCTTGAAAAAGACACAACTTTTGATACCAAAAGATCATGTTTAGGAGCCTTATACAACCTATCAACAATGTTAGAAAATGCAAGTTCTTTAGTTTCTTATGGTCTTGTCCCAATTTTATTGGAACTTTCCTTAGTAAAAGAAATTTCAGAAAAAACACTTGCTACTTTAGCACATCAAAGTATATCACAAAGAGAGAAAATGTCACAAGCTAGGATTGTTCCTATGCTTCTTGAAGTTGTTTTATTAGGGAGTCCTTTAGCTCAAAAGAGAGCAATGAAACTATTGCAATGGTTTAAGGATGAAAGACAAATTAAGATGGGACCACATTCTGGTCCACAATCACCAAGATTTATAATGGGGTCACCTTTAAATCAAAGAGATACAAATGAAGGGAAGAAAATGATGAAGagtttggtcaaacaaagtTTGCATAAGAATTTGGAAATAATAACTCAAAGGGCAAATGCAAATGGagaatcttcaaaactcaagtCATTGGTTATTAGCACAAGTTCCAAGAGTTTACCTTATTGA 1179 0.3333 MPTPSSSSSSSIWVLSNIKLQFFTRIRRFLQSKATRKRCDASNCLKREENIQHRDEQNKVEKIETVEVMENLKEEEVEETEILLQKTVKMLHFGSWEEKEVAAKEIESLVKEDVKVRKLITELGVVPVLVSMVASQVASRRSAGLTALIHLADGTYTNKALIVEAGILSNLPKKIDLIDESTISEFAELLLSLSSLANTQFPFASLDFIPFLKDILEKDTTFDTKRSCLGALYNLSTMLENASSLVSYGLVPILLELSLVKEISEKTLATLAHQSISQREKMSQARIVPMLLEVVLLGSPLAQKRAMKLLQWFKDERQIKMGPHSGPQSPRFIMGSPLNQRDTNEGKKMMKSLVKQSLHKNLEIITQRANANGESSKLKSLVISTSSKSLPY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03956 392 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 270 392 - -
Tsu08g03956 392 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 74 273 - -
Tsu08g03956 392 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 270 392 - -
Tsu08g03956 392 Gene3D - 84 321 IPR011989 -
Tsu08g03956 392 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 74 273 - -
Tsu08g03956 392 SUPERFAMILY ARM repeat 26 313 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03956 Tsu-Chr8 57860520 57864001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03956 94 313 U-box Gene Family AT3G54850 28.571 5.57e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03956 - - gmx:100813828 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03956 08 57860520 57864001 Tsu08g03956 08 57860520 57864001 ECH