Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03955 ATGGATTTTAGCTCAGAAATTTCGAGGGTAGTTTTCAATGCCAATTTATATAGCTTTGGAACTTCAAATGAGATTTCAAGAGGTGGATTTGTATCATCAAATTCATTGGTTTTGGATGGTGAGAAAGGAGAACTAGTGAAGTCTCCTACAATAATTGGAGACAAAAAGATATGTGATGCTAAAAAAACTTTAGTGGCTTTGAAGAATCATAGAGAGGCAGAGAGGAAAAGAAGGAACAAAATTAATGGTCATCTTGCTAAACTTCGTGGACTTGTGCCCTCCTCTCCAAAgATGGACAAAGCAACCTTACTAGCAGAAGTAATTAGGCAAGTAAAGGAATTGAAAAATAATGCTAATCAAGCTAGCAAAGGTTATTTAATCCCAATAGATGGTAATGAAGTAAAAGTTGAAGTTGAATCATGTGAAAAGGGTGGAGTAGATGGATCAATTCTTTACAAAGCATCAATCTGTTGTGATTACCAACCAGAACTTCTTTCTGATCTAAAACAAACTCTTGATACCCTTCAACTACAATTGGTAAGGGCAGAATTGTCCACTTTGGGAGACAGGGTTAAGAATGAATTTGTCTATAATTGTTGCAAAGTAGACATTTATAATATTGAGCTATGTCAACTCATTGCAAATAATGTTCATCAGGCACTTAGTTCTGTATTGGATAAGGCTTCTACCTCAATGGATTACTCATTAAGGGCACCACATCGTTGGAATCAGCTGCAGCAGACATCTACTTTGTCATGCAACCATGatttttgttcttgttga 783 0.3538 MDFSSEISRVVFNANLYSFGTSNEISRGGFVSSNSLVLDGEKGELVKSPTIIGDKKICDAKKTLVALKNHREAERKRRNKINGHLAKLRGLVPSSPKMDKATLLAEVIRQVKELKNNANQASKGYLIPIDGNEVKVEVESCEKGGVDGSILYKASICCDYQPELLSDLKQTLDTLQLQLVRAELSTLGDRVKNEFVYNCCKVDIYNIELCQLIANNVHQALSSVLDKASTSMDYSLRAPHRWNQLQQTSTLSCNHDFCSC 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03955 260 PANTHER DNA BINDING PROTEIN-LIKE 9 251 - -
Tsu08g03955 260 Gene3D - 62 124 IPR036638 GO:0046983
Tsu08g03955 260 Coils Coil 104 124 - -
Tsu08g03955 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Tsu08g03955 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 122 IPR036638 GO:0046983
Tsu08g03955 260 PANTHER TRANSCRIPTION FACTOR BHLH30 9 251 IPR045847 GO:0003700|GO:0006355
Tsu08g03955 260 Coils Coil 165 185 - -
Tsu08g03955 260 Pfam Helix-loop-helix DNA-binding domain 69 114 IPR011598 GO:0046983
Tsu08g03955 260 CDD bHLH_AtAIG1_like 61 139 - -
Tsu08g03955 260 CDD ACT_UUR-ACR-like 155 196 - -
Tsu08g03955 260 SMART finulus 71 120 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03955 Tsu-Chr8 57851195 57853847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03955 68 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.077 4.87e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g03955 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03955 - - mtr:MTR_2g015890 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03955 08 57851195 57853847 Tsu08g03955 08 57851195 57853847 ECH
Tsu08g03955 08 57851195 57853847 Tsu02g03463 02 38781091 38784406 ECH