Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03946 ATGCCGGATTTTCACGATTCTCtctctccaccaccaccaccgccgTCATCTCGCCCTATCCCCGTTCGCGAGGATTGTTGGTCTGAAGAAGCTTCTTCTACTCTCGTTGATGCATGGGGTAGTCGTTATCTTGATCTTAATCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACTAAGAAAACTCATCGCACCGATGTTCAGTGTAAGAATCGAATTGATAcgattaagaaaaaatataagatcGAAAAAGCTAGGGTTTCCAATTCCAATGgtgttttttcttcaacttgGCCTTTTTATGATCGATTGGATATGTTGATTGGTCCTAATTTCAATACGAAgaaatcttcttcttctccatcgCCATCTCCACCTGTTGCTCTTCCGTTGGTTCCTCATCGGAAATTTCCTAATTCTCCGTCTCCGGCTCCTGTTCCGGTTGCTGTTGCTCTTCCACAGAAGAGGTCGCTTGCGACGGTGATGGATGATGGTTATTTTAGGAGGAATTATTCTGCTGTGGCTGCCGCGGCTGCTGCTGCGGAGaatgatgaagatgaggagGAGGATGAAGAGGAGGAAGTTGAGGAGGAAGAGGTTGAGGTTGAGGAGGAAGAAGGGAGGGGAAGTGAAGTTGATGAAGGGGATAAAGGGAAGGAAGGGATGAAGAGGTTGGCTAAGGCTATTGAGAAATTTGGTGAAATGTATGAGAGAGTTGAGGGACAGAAACTGAGGCAGATGATTGATTTGGAGAAACAAAGGATGGAGTTTGCTAAAGATATTGAAGTGCAAAGGATGCAGATGTTTATGGATACACAAGTTCAGCTGGAGAGAATCAAGCGTGGGAAACGATCTGGGTCTAATGATATGTATAGCTAG 912 0.4002 MPDFHDSLSPPPPPPSSRPIPVREDCWSEEASSTLVDAWGSRYLDLNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSNSNGVFSSTWPFYDRLDMLIGPNFNTKKSSSSPSPSPPVALPLVPHRKFPNSPSPAPVPVAVALPQKRSLATVMDDGYFRRNYSAVAAAAAAAENDEDEEEDEEEEVEEEEVEVEEEEGRGSEVDEGDKGKEGMKRLAKAIEKFGEMYERVEGQKLRQMIDLEKQRMEFAKDIEVQRMQMFMDTQVQLERIKRGKRSGSNDMYS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03946 303 MobiDBLite consensus disorder prediction 188 233 - -
Tsu08g03946 303 MobiDBLite consensus disorder prediction 192 221 - -
Tsu08g03946 303 PANTHER OS05G0560600 PROTEIN 3 299 - -
Tsu08g03946 303 MobiDBLite consensus disorder prediction 1 20 - -
Tsu08g03946 303 MobiDBLite consensus disorder prediction 125 152 - -
Tsu08g03946 303 Pfam Myb/SANT-like DNA-binding domain 24 117 IPR044822 -
Tsu08g03946 303 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 3 299 IPR044823 -
Tsu08g03946 303 MobiDBLite consensus disorder prediction 1 22 - -
Tsu08g03946 303 Coils Coil 185 219 - -
Tsu08g03946 303 Gene3D - 27 93 - -
Tsu08g03946 303 MobiDBLite consensus disorder prediction 134 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03946 Tsu-Chr8 57760797 57765920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03946 225 302 Trihelix Transcription Factor Family AT3G14180 42.683 1.48e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu08g03946 Myb_DNA-bind_4 1.2e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03946 - - gmx:100815241 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03946 08 57760797 57765920 Tsu08g03946 08 57760797 57765920 ECH