Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03930 ATGAAACCaagaaaaaatatgaaacaCTTTTATAAGTTCTTGATTCTTCTATCACTTATTACTCTCACAGAATCATTATCATCTTCATGCAATATTGAAAACAAGAACCTAGTATCAAAAGCTTTTCAATTTGTCTCAGGATTCAACACTTCCTTATTCCAAACAAATTCTTTCAACTGTTCTTCAAAGGGTGAAATTAACATCATAGAACTTTCTTCCAAAAACTTAACAGGAAACATCTCATGGAGATACCTAAGAAACATGACAAAGTTAGAATTTCTTGATCTTTCAGGAAATTTTCTACAAGGTCAAATACCAAACTGGTTTTGGAGAAgtttttcaagattatcaaaaGTGAATCTTTCTAACAACAGATTCGGTGGAAGCATTGCATTGACAACAAAAACCAACACAAAACCCATTTCTCAAAATGGTTCCTTTTTCTCTTCATCACTACAAAGTCTCAATCTTTCACATAATAGGTTCACAAATCAAGTTCAACTTTCATTTTTTCATAACCTTAAAATCCTCGACCTTTCACACAACAACCTTAACACTTTACCTTATGGTTTTCAAAATGTTACAAATCTTAACTACCTTGATCTCTCAAACTGTAAAATCAAAGGTAACATTAAACCCATTTCTTACCTTAAATCACTTTCTTCCTTAAACCTTTCAAATAACTCTTTGAATGGTAGTTTCCCTTTTGATTTTCCTTCTCTAAATAACCTTAAATTCCTCAACATCTCAAACAATAACTTCAACTCTTCAATTTCCTTaaacaaattcatcaaaaaatttggaaaatcaTCATTCATTCACGCAGGTAACAACTTCAATTTCAACAATATCAACAACATAAGCaacaaatcatccaaaacaccaaacattcattcaaattcaaattcaactcTACCACACCACTCCCAACAACTCCATATGAAAAAGACAAATCCCattcacaaacacaaacacaaacaaaagtcaaaaacaaaaacaagaaccGTGATTATTGCAACAGTTTCCTCAGTATCAGCAATTGTTTTTGTCGTGTTATGCATCTGGGCAATCTtagtttacaaaaaaaagagaaatttagcaaaaaaaaacaaatgggCAATTTCAATATCAAAACCAATAACAGCATTAACAACAGCCGTTAAGATGGAGAAATCTGGACCGTTCGCATTTGAAACAGAATCAGGAACATCATGGGTAGCTGATCTAAAAGAACCATCATCAGCATCAGTAGTTATGTTTGAGAAACCTTTGATGAACATTACATTTGTTGATCTTATGAATGCCACGTCATACTTTGGAAAAGATTCTCAATTAGCTGAAGGTAGATGTGGACCAGTTTATCGTGCTGTTTTACCAGGTGAATTACACGTGGCAATCAAGGTTCTTGAGAATGCTAGAGACGTTGATCATGATGACGCTGTTGATACTTTCGTTGACTTGTCTCAGCTTAAACATCCTAATCTTTTGCCTCTCTCCGGTTACTGTATTGCAGggAAGGAGAAGCTAGTGTTGTACGAGTTTATGTCAAACGGAGACTTAGGCAGGTGGCTACACGAATTACCAACGGGTGAAACTAATGTGGAGGATTGGAGTAGCGACACGTGGGAGATTCAAAACGGCGTCGGTTCACAAACCCCCTCGCCAGGAAAAATGGGTTGGCCAACACGACACCGTATTGCTATAGGAGTAGCGCGTGGTCTAGCTTTTCTCCACCATGCAGGATCAAAGCCCGTTGTTCACGGCCATTTGGTAACATCAAATGTCCTACTTGCTGATGATTTCGAGCCTCGAATTGCTGATTTTGGGTTTCGAAAATTCGGGCAACAATGTCCTCCGAATTGTAGCACCGAAACCGATGTTTATTGCTTTGGTGCGGTGCTTATGGAGCTTTTAACGGGGAAGCCCGGTACGGCAGAGACGGTTGTTTGGGTGAGGAAGCTTGTAAGAGAAGGTCATGGAGTGAGGGCAATTGATGAAAGGATGAAACTCGACGGTGGTGACTCGGAGAGTCAAATGGTGGAGAGTCTCCGAGTTGCGTATTTATGTACTGCTGAGTCACCTGGGAAGAGGCCCACTATGCAACAAGTTTTAGGGCTTCTTAAAGATATTCATCCAAGAGCTGGACATAGACTGAGTTGA 2160 0.3532 MKPRKNMKHFYKFLILLSLITLTESLSSSCNIENKNLVSKAFQFVSGFNTSLFQTNSFNCSSKGEINIIELSSKNLTGNISWRYLRNMTKLEFLDLSGNFLQGQIPNWFWRSFSRLSKVNLSNNRFGGSIALTTKTNTKPISQNGSFFSSSLQSLNLSHNRFTNQVQLSFFHNLKILDLSHNNLNTLPYGFQNVTNLNYLDLSNCKIKGNIKPISYLKSLSSLNLSNNSLNGSFPFDFPSLNNLKFLNISNNNFNSSISLNKFIKKFGKSSFIHAGNNFNFNNINNISNKSSKTPNIHSNSNSTLPHHSQQLHMKKTNPIHKHKHKQKSKTKTRTVIIATVSSVSAIVFVVLCIWAILVYKKKRNLAKKNKWAISISKPITALTTAVKMEKSGPFAFETESGTSWVADLKEPSSASVVMFEKPLMNITFVDLMNATSYFGKDSQLAEGRCGPVYRAVLPGELHVAIKVLENARDVDHDDAVDTFVDLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGETNVEDWSSDTWEIQNGVGSQTPSPGKMGWPTRHRIAIGVARGLAFLHHAGSKPVVHGHLVTSNVLLADDFEPRIADFGFRKFGQQCPPNCSTETDVYCFGAVLMELLTGKPGTAETVVWVRKLVREGHGVRAIDERMKLDGGDSESQMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPRAGHRLS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03930 719 ProSiteProfiles Protein kinase domain profile. 439 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03930 719 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 714 - -
Tsu08g03930 719 SUPERFAMILY Protein kinase-like (PK-like) 416 707 IPR011009 -
Tsu08g03930 719 SUPERFAMILY RNI-like 65 259 - -
Tsu08g03930 719 Gene3D Ribonuclease Inhibitor 27 139 IPR032675 -
Tsu08g03930 719 SMART LRR_typ_2 217 240 IPR003591 -
Tsu08g03930 719 SMART LRR_typ_2 171 193 IPR003591 -
Tsu08g03930 719 SMART LRR_typ_2 88 112 IPR003591 -
Tsu08g03930 719 Pfam Protein tyrosine and serine/threonine kinase 442 704 IPR001245 GO:0004672|GO:0006468
Tsu08g03930 719 Gene3D Ribonuclease Inhibitor 140 277 IPR032675 -
Tsu08g03930 719 Gene3D Transferase(Phosphotransferase) domain 1 515 717 - -
Tsu08g03930 719 ProSiteProfiles Leucine-rich repeat profile. 196 218 IPR001611 GO:0005515
Tsu08g03930 719 PRINTS Leucine-rich repeat signature 217 230 - -
Tsu08g03930 719 PRINTS Leucine-rich repeat signature 174 187 - -
Tsu08g03930 719 MobiDBLite consensus disorder prediction 291 310 - -
Tsu08g03930 719 Gene3D Phosphorylase Kinase; domain 1 399 514 - -
Tsu08g03930 719 Pfam Leucine rich repeat 151 207 IPR001611 GO:0005515
Tsu08g03930 719 PANTHER KINASE, PUTATIVE-RELATED 9 714 - -
Tsu08g03930 719 ProSiteProfiles Leucine-rich repeat profile. 173 195 IPR001611 GO:0005515
Tsu08g03930 719 ProSiteProfiles Leucine-rich repeat profile. 151 172 IPR001611 GO:0005515
Tsu08g03930 719 Pfam Leucine Rich Repeat 90 109 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03930 Tsu-Chr8 57620947 57624991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03930 64 710 Receptor kinase-like Gene Family AT5G07280 29.255 9.65e-68 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Tsu08g03930 PK_Tyr_Ser-Thr 2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03930 - - gmx:100778920 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03930 08 57620947 57624991 Tsu08g03930 08 57620947 57624991 ECH
Tsu02g01042 02 8659772 8662317 Tsu08g03930 08 57620947 57624991 PCT