Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03927 ATGTCTACTTCTGTTATCAATGGGAATGATTCCCTCACTGGTCATATCATATCGACAACAATTGGAGGCAAAAATGGGGAGCCTAAACAGACTATTAGTTACATGGCAGAGCGTGTTGTAGGAACTGGTTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAAGCAGTGGCCATTAAGAAGGTTTTACAAGACCGAAGATATAAGAACCGTGAACTACAGTTGATGCGTGTGATGGATCATCCAAATGTGGTCACTTTAAAGCATTGCTTCTTTTCCACAACAAGTACAGATGAACTTTTTCTGAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATCGGGTCTTAAAGCACTATAACAATGCCAATCAGAGAATACCAATCATCTATGTGAAACTTTATATGTACCAGATCTTCAGGGGGTTGGCTTATATCCACACTGTTCCCGGAGTTTGCCACAGGGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTTCACATCAAGTTAAGCTATGTGATTTTGGAAGTGCAAAAATGCTGGTCAAGGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGAGCTCCAGAACTTATATTTGGTGCTACAGAGTATACTACCTCAATTGATATTTGGTCAGGTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCACTATTTCCTGGTGAAAATGCAGTGGATCAGCTCGTACATATTATAAAGGTGCTTGGAACACCCACTCGGGAGGAAGTACGCTGCATGAATCCCAATTACAATGACTTCAGGTTTCCGCAAATAAAAGCACACCCATGGCACAAGATCTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCTTCCCGACTTTTGCAGTACTCCCCAAGTCTTCGTTGCACTGCCCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGCCGTCCGTTTCCCCCTCTTTTCAACTTCAAACAGGAATTATCAGGAGCATCTCCAGAGCTTGTTAATAAGTTGATACCTGACCACATAAAGCGGCAAATAGGACTACAATTTGTTCAATCAACTGGTTCATGA 1125 0.4222 MSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVVTLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYNNANQRIPIIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLSHQVKLCDFGSAKMLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSGGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDHIKRQIGLQFVQSTGS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03927 374 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03927 374 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03927 374 SUPERFAMILY Protein kinase-like (PK-like) 33 343 IPR011009 -
Tsu08g03927 374 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 368 - -
Tsu08g03927 374 CDD STKc_GSK3 29 321 IPR039192 -
Tsu08g03927 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Tsu08g03927 374 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03927 374 Gene3D Transferase(Phosphotransferase) domain 1 114 361 - -
Tsu08g03927 374 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Tsu08g03927 374 PANTHER BNAC07G50210D PROTEIN 1 368 - -
Tsu08g03927 374 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03927 Tsu-Chr8 57592235 57596145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03927 38 356 MAP Kinase Gene Family AT3G59790 36.310 4.27e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Tsu08g03927 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03927 K14502 - gmx:100779909 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03927 08 57592235 57596145 Tsu08g03927 08 57592235 57596145 ECH
Tsu08g03927 08 57592235 57596145 Tsu02g03459 02 38733257 38738860 ECH