LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g03927	ATGTCTACTTCTGTTATCAATGGGAATGATTCCCTCACTGGTCATATCATATCGACAACAATTGGAGGCAAAAATGGGGAGCCTAAACAGACTATTAGTTACATGGCAGAGCGTGTTGTAGGAACTGGTTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAAGCAGTGGCCATTAAGAAGGTTTTACAAGACCGAAGATATAAGAACCGTGAACTACAGTTGATGCGTGTGATGGATCATCCAAATGTGGTCACTTTAAAGCATTGCTTCTTTTCCACAACAAGTACAGATGAACTTTTTCTGAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATCGGGTCTTAAAGCACTATAACAATGCCAATCAGAGAATACCAATCATCTATGTGAAACTTTATATGTACCAGATCTTCAGGGGGTTGGCTTATATCCACACTGTTCCCGGAGTTTGCCACAGGGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTTCACATCAAGTTAAGCTATGTGATTTTGGAAGTGCAAAAATGCTGGTCAAGGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGAGCTCCAGAACTTATATTTGGTGCTACAGAGTATACTACCTCAATTGATATTTGGTCAGGTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCACTATTTCCTGGTGAAAATGCAGTGGATCAGCTCGTACATATTATAAAGGTGCTTGGAACACCCACTCGGGAGGAAGTACGCTGCATGAATCCCAATTACAATGACTTCAGGTTTCCGCAAATAAAAGCACACCCATGGCACAAGATCTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCTTCCCGACTTTTGCAGTACTCCCCAAGTCTTCGTTGCACTGCCCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGCCGTCCGTTTCCCCCTCTTTTCAACTTCAAACAGGAATTATCAGGAGCATCTCCAGAGCTTGTTAATAAGTTGATACCTGACCACATAAAGCGGCAAATAGGACTACAATTTGTTCAATCAACTGGTTCATGA	1125	0.4222	MSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVVTLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYNNANQRIPIIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLSHQVKLCDFGSAKMLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSGGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDHIKRQIGLQFVQSTGS	374

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu08g03927	374	ProSiteProfiles	Protein kinase domain profile.	34	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Tsu08g03927	374	Pfam	Protein kinase domain	34	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Tsu08g03927	374	SUPERFAMILY	Protein kinase-like (PK-like)	33	343	IPR011009	-
Tsu08g03927	374	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	1	368	-	-
Tsu08g03927	374	CDD	STKc_GSK3	29	321	IPR039192	-
Tsu08g03927	374	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	155	167	IPR008271	GO:0004672\|GO:0006468
Tsu08g03927	374	SMART	serkin_6	34	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Tsu08g03927	374	Gene3D	Transferase(Phosphotransferase) domain 1	114	361	-	-
Tsu08g03927	374	Gene3D	Phosphorylase Kinase; domain 1	19	113	-	-
Tsu08g03927	374	PANTHER	BNAC07G50210D PROTEIN	1	368	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g03927	Tsu-Chr8	57592235	57596145	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g03927	38	356	MAP Kinase Gene Family	AT3G59790	36.310	4.27e-58	192

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Tsu08g03927		Pkinase	1.5e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g03927	K14502		-	gmx:100779909	742.651

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu08g03927	08	57592235	57596145	Tsu08g03927	08	57592235	57596145	ECH
	Tsu08g03927	08	57592235	57596145	Tsu02g03459	02	38733257	38738860	ECH

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