Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03926 atgGAAAGTgttaaagtgttttttttgtttgtttcctttatttttctatgGAATTTGATGGCTTTTGTTGTTGAGGGTACTGAAAGTCTTCTCTCTCCAAAGGGTGTCAATTATGAAGTGGCTGCTTTGATGTCTATGAAGAGTAAGATGAATGATGAGTCACATGTTATGAATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGTTGGTTGCTCTTCTGAGGGTTATGTCATTTCATTGGAAATGGCCAGTGCTGGTTTATCTGGAATAATTTCCTCAGGAATTGGAAATTTGAGCCATCTCAGAACACTGTTATTGCAGAACAATCAGCTATCTGGTCCTATCCCGGTTGAGATAGGAAACCTGTTAGAACTTCAGACTCTTGATCTTTCTGGTAACCAGCTTGTTGGGAACATTCCTAGTTCTTTGGGCTCTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAACTTGTTGCTAATCTCACTGGCCTTTCGTTCTTGGATTTATCATTCAACAATCTCAGTGGTCCTACTCCAAAAATCTTAGCAAAAGGTTATAGTATTTCAGGAAACAACTTCCTCTGTACATCATCGTCACAAATTTGTATGGGCGGTTCGAAGCCAGTAAATGATACAGGATCATCATCTCAAACAACCAGAAGTCATCGACATACGGTGCTTTCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTGATGCTGCTTGCGTATTGGTTACATTGGTACAAATCACGCATCCTCTATTCATCTTATGTGGAGCAAGATTGTGAATTTGGTATTGGTCATTTGAAGAGGTTCTCCTTCCGTGAATTGCAAGTTGCTACTGGAAATTTCACTTCGAAAAATATCGTAGGACAAGGTGGTTTTGGTGTTGTATACAAAGGATGCCTTGCAAACAAAATGTTGGTGGCAGTAAAGAGGCTTAAAGATCCTAATTATACCGGAGAAGTGCAGTTTCAAACCGAAGTTGAGATGATTGGCTTGGCTGTACATCGTAACCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTCGTTTATCCGTTCATGCCTAATGGCAGCGTTGCTGATCGCTTGAGAGAGAGTTTCCGTGGAAAGCCATGTTTGGATTGGAACAGGCGAATGCACATCGCTGTTGGGGCTGCACGAGGGCTTTTGTATTTGCACGAGCAGTGCAATCCAAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTTGGAGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACACGTAACTACTGCAGTACGCGGCACTGTAGGACACATTGCTCCCGAGTATCTCTCAACTGGTCAGTCTTCTGAAAAAACAGATGTTTTTGGATTCGGCATATTACTTTTGGAGCTCATAACTGGACAAAAGGCACTCGATGCTGGAAACGTTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTAAGTagcttttcaaatttttaa 1575 0.3981 MESVKVFFLFVSFIFLWNLMAFVVEGTESLLSPKGVNYEVAALMSMKSKMNDESHVMNGWDINSVDPCTWNMVGCSSEGYVISLEMASAGLSGIISSGIGNLSHLRTLLLQNNQLSGPIPVEIGNLLELQTLDLSGNQLVGNIPSSLGSLTHLSYLRLSKNKLSGQIPQLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSSSQICMGGSKPVNDTGSSSQTTRSHRHTVLSVVIGFSCTFVISVMLLAYWLHWYKSRILYSSYVEQDCEFGIGHLKRFSFRELQVATGNFTSKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPFMPNGSVADRLRESFRGKPCLDWNRRMHIAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNVQVQKGMILDWVSSFSNF 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03926 524 SUPERFAMILY L domain-like 38 207 - -
Tsu08g03926 524 Gene3D Ribonuclease Inhibitor 36 216 IPR032675 -
Tsu08g03926 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Tsu08g03926 524 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Tsu08g03926 524 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 521 - -
Tsu08g03926 524 Gene3D Transferase(Phosphotransferase) domain 1 376 523 - -
Tsu08g03926 524 Pfam Protein kinase domain 301 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03926 524 Gene3D Phosphorylase Kinase; domain 1 270 375 - -
Tsu08g03926 524 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Tsu08g03926 524 ProSiteProfiles Protein kinase domain profile. 300 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03926 524 SUPERFAMILY Protein kinase-like (PK-like) 283 518 IPR011009 -
Tsu08g03926 524 SMART serkin_6 300 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03926 524 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03926 Tsu-Chr8 57586142 57590137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03926 44 521 Receptor kinase-like Gene Family AT5G45780 73.486 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Tsu08g03926 Pkinase 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03926 - - gmx:100810610 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03926 08 57586142 57590137 Tsu08g03926 08 57586142 57590137 ECH