Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03925 ATGGGTCTAGATAAGTGCAAAGGTAGTGTTGAGGTGTTAGATTCATCAGTTCATGAAGTGATtgatgagaatttaagtaatttTGTTGAAGGGGTTGGAGATGTTGGAACTTCAAGAGAGGTGAGTAAGGATTTAGGATCCAATAAGGAGCTAAACGAGACGGCTGAGGAAGTTAAGGTTCAGGAAAAGCGCGATGAATTGCCGGTGGTTGATCAAGGAACTAGTTATAGTTCAAGCAATTTGGTTAATCATGGTGTGGTTGAGACAGTGGTTGTAATAGATGCTGTTAATGTTCAGACTGAGGGTATGAAATTGGAAACAAAAGCTGATGAATCAGGGCTTAGTTTGGTTTCAATGAAAGCGCCGAAAGGGGTGTGTGAAACTGATAAAGATTCATGTGTGATTGATATGAAGTGTAGTAGTCACAAAGGTTTTTATGATGTTTCACAAGGCGAAAAGATTTGTAGGATTTGTCATCTGACTTTTGGACAGTCGTCGGATGAAACAAGTGTTGAAAATGGTAGTGCTACAAGTGGTGATTTTATTCAACTCGGTTGTTCGTGTAAAGACGAGCTCGGCATTGCACATATGCATTGTGCTGAGGTGTGGTTCAAGCTCAAGGGAAACAGgTTATGCGAAATATGTGGCGAGACTGCAAAAAATGTTTCTGTTATTTCTAATAATGGATTTATGGAAGGGTGGAATGATAGAAGATTCATGGACAACGACGCCAACTCATCCCAGCAAAGGTTTGGTGGATGCTGGCGAGGACAGCCATTTTGTAATTTCTTGATGGCGTGCCTGGTAATAGCTTTCATTCTGCCATGGTTTTTTCATGTAAGTATGTTCTAG 852 0.3991 MGLDKCKGSVEVLDSSVHEVIDENLSNFVEGVGDVGTSREVSKDLGSNKELNETAEEVKVQEKRDELPVVDQGTSYSSSNLVNHGVVETVVVIDAVNVQTEGMKLETKADESGLSLVSMKAPKGVCETDKDSCVIDMKCSSHKGFYDVSQGEKICRICHLTFGQSSDETSVENGSATSGDFIQLGCSCKDELGIAHMHCAEVWFKLKGNRLCEICGETAKNVSVISNNGFMEGWNDRRFMDNDANSSQQRFGGCWRGQPFCNFLMACLVIAFILPWFFHVSMF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03925 283 Pfam RING-variant domain 155 215 IPR011016 GO:0008270
Tsu08g03925 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 58 283 - -
Tsu08g03925 283 PANTHER ZINC FINGER, RING-CH-TYPE 58 283 - -
Tsu08g03925 283 ProSiteProfiles Zinc finger RING-CH-type profile. 147 222 IPR011016 GO:0008270
Tsu08g03925 283 SMART ringv_2 154 216 IPR011016 GO:0008270
Tsu08g03925 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 227 IPR013083 -
Tsu08g03925 283 SUPERFAMILY RING/U-box 151 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03925 Tsu-Chr8 57576806 57579461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03925 135 282 C3H Transcription Factor Family AT5G05830 38.816 3.47e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03925 - - gmx:100791720 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03925 08 57576806 57579461 Tsu08g03925 08 57576806 57579461 ECH
Tsu02g01039 02 8638738 8641278 Tsu08g03925 08 57576806 57579461 PCT