Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03924 ATGGCCAAACTAAGCTCTCTCTTCTTTTGTCTCTCACTCTCACTAAATTATTACTTCTTCACTTGCTTAGCTATGAGTAGAAAAAACATAACCACAGATGAACTTTCACTTCTTGCATTCAAATCATCCATTACTCTAGACCCTTATCACATGGTTCAAAATTGGTCAACCTCTTCTTCTTTATGCACTTGGGTTGGTGTCACATGTGATGAACAACATAGTAGAGTCCATAGTTTGGATCTTAGTAACATGGAACTTGAAGGTACTATTTCCCCACAACTAGGGAATCTCTCTTTCCTTGTTTACCTTGATCTTCAAGGCAACTATTTCACGGGTGAATTTCCACAATCTTTGTTTGGATTGCATAGATTGAAGTTTCTTAATTTGAGGTATAATGAGTTTATTGGAGGAATTCCAATAGGAGTTGGAGAATTATCAAAACTTCAATATTTGAATCTTGGTCATAACAATTTTAGTGGTTTAATTCCACATGTTATTGGTCAACTTCATGTGTTGAGGATTTTGGATATTAGCAATAACAAGCTCTATGGAACCATACCTCAAACGATTTCCACCTTGTCTTCACTTGAAGAAATTTATTTAGCTAATAACTCATTTTCAGGAGAAATTCCAAAAGAGATGGGTGATCTTACTCAGCTGAGAAAAATGAACCTTGAACACAATCAACTTTCTGGCAACATACCATCGACGAACAACTCACTGTTGCAACATATTTTTCTTggttataataatttatctggTAATCTTCCATCAAATATTTGCAAAGGACTTCCAAAACTTAGAACACTTGATCTTTCTCATAATGATTTTGTTGGTGACATGCCAACTATTTGGCATCAATGTGAAAATTTGGAAGAATTAAAATTATCTTTCAATCGTTTCAACAAAGGACCAATGCCAAATGAAATGGGAAACTTGAACAAGCTTCAATATTTATCTCTTACTACCAACAACTTGGAGGGTGGAATTCCATTCTCTCTTTTCAACATTACTACATTGAAGAGTGTTAACCTTGGTGGTAACAATTTAAATGGAACTCTACCAAGTGAGTTATGTCATTCGCTTCCTCAACTTGAAACATTTGATTTGAGCAATAATCAATTGGAAGGAAACATTCCGCGATCAATTGGCAACTGCACATCGCTGACATACTTGTTTTTGAATGATAATCATTTTATCGGTTCAATACCAGAGGACATTGGCTATCTTGATCATCTTGTGTACCTAAATGTGTTAAACAATAGATTGAGTGGACCTGTTGCTCCAAAACTCTTCAACATTTCAACATTGATCTCATTGTATCTCACAAACAATTCTCTCTCAGGGACTCTTCCCTCAGACTTGGGGAGTGGCTGTCCTAATCTGGTGTACCTGCAACTACGTGGAAACATGTTTGAGGGAAACATTCCAAAAGGTATAGCCAATGCTTCTAAGCTCACTGAAATAGATTTTCTTGGAAATCAGTTCAGTGGAACAATACCTGATGTCTTTGGTGGTTTAACATACCTTGAGTGTCTTCATTTAGATAACAATAAGAATCTGAGATTAGATGATTCCTTTGGATTCAACTTCCTTACTTCACTCACAGGTTGTACAAGTTTGAAATATTTGAGTGTATCCGGAACTAGATTATCCAAACTTCCCAAGTCAATTGGAAACTTAACCGTAGGATACCTTTGGGCATATTCTTGCGGAATTGATGGTAATTTACCACCGGAAATCGGAAACATGAAAAACCTGGTTATGTTATCTATGAGTAGGAACAATTTAAACGGACCGATTCCTCGTACGATTAAAGAGTTACACCTTCAGTATTTGGATCTTGAATACAATGAACTGCAAGGTTCCATTGTTGATGAGCTTTGTGAAATTAAGAGTTTGAGTAATTTGTATCTGTCAAATAATAAGCTTTCTGGAGTGTTGCCAACATGCTTAGGAAACATGAAGTCTCTTAGAAATGTTCGCTTAGGATCTAATAGATTGACCTCTGAGATACCTTCTTCGTTTTGGAGTCTCAAAGATATCAATGAGTTAAACTTATCCTCTAATGCTTTAATCGGAAATCTTCCAATGGAGATTAGTAAATTGAGAGCAGTTGTACAGTTAGATCTGTCGGGAAATCAGATTTCAGGCAACATTCCTGAAATCATAGGCTCGTTAACAACTTTGCAGACTCTCTCCTTAGCACGTAACAAATTGAATGGGACGATTCCCGCATCACTCGGTGAAATGGTAATCTTGAGTTTCTTGGacttgtcaaataatcttcttaCTGGTGAGATTCCAAAATCCTTTGCGAAGAATGGCTCTCTTAAAAGTATCAACTTTTCATACAATATGTTACAAGGAGAGATTCCTGATGGTGGACAGTTCAAAAATTTAACGGCTCAATCTTTCATGCATAATGAAGCACTCTGCGGTAATCCTCTTCTACAGGTACCTCCATGTGATAAGCATAGAAGGTCTATCGCAAAGACGATATTAATCAAATGCATGCTGCCCATAATTGTTTCAGCCATTTTAGTTGCTGGATGCATTATACTTGTACTGcacaaaaggaaaaaagttgAACATCGAGCTGAAAGCGATGTATCAACTATAGGAGTTCCAAAAAGGATTTCATATTATGAACTTGTGCATGCAACTAATGGATTCAGTGCGATTAATTTACTTGGAAAGGGAAGCTTTGGATCTGTGTATCAAGGGATGCTTTCTAGTGGGAAGATGGTTGCAGTTAAAGTAATTGATTTAAGCTTTGAAGCAACATCAAAGAGTTTTGATGTAGAATGCAACGCAATGCGCAATCTACGACATCGAAATCTTGTTGAGATTATTACTAGTTGTTCACATGTTGATTTCAAATCTCTTGTGATGGAGTTTATGTCAAATGGAAGTGTTGAAAAATGGTTATACTCATATAACTATTGTTTAGATTTCTTGCAAAGGTTGAACATAATGATAGATGTAGCATCTGCATTGGAGTATCTTCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATCTGAAACCTAGTAATGTTTTACTAGACAAAAACATGGTTGCGCATGTTAGCGATTTTGGCATTGCCAAGCTCTTGGATGATGGACAGTCTAAAATTCATACTGGGACTTTAGCTACTATTGGTTACGTTGCACCAGAGTATGGTTCTAAGGGCATTGTTTCGATTAAAGGAGATGTATACAGCTATGGGATTATGCTTATGGAGATGTTCACAAGAAAGAGGCCAACAGATGAAATGTTTGCAGAAGAATTAACGTTGAAAACATGGATCAGTGAATCAATGACTAATTCAGTTATGGAAGTTGTTGATTCAAATTTAGTTCAACATCATGAAAAAACAATTCATGACATTGTGCCTCATATATCATCTATTTTGGCTTTAAGCTTGAGCTGTTGCGCGGATTCACCTGAAGAGCGAGCTAACATGACAGATATCACTGCATCACTaatcaaaatcaagaacttATTCCTCCAAGAAAAAGGAAATGAAGATGTGAAGATATGTTTGTGA 3555 0.3578 MAKLSSLFFCLSLSLNYYFFTCLAMSRKNITTDELSLLAFKSSITLDPYHMVQNWSTSSSLCTWVGVTCDEQHSRVHSLDLSNMELEGTISPQLGNLSFLVYLDLQGNYFTGEFPQSLFGLHRLKFLNLRYNEFIGGIPIGVGELSKLQYLNLGHNNFSGLIPHVIGQLHVLRILDISNNKLYGTIPQTISTLSSLEEIYLANNSFSGEIPKEMGDLTQLRKMNLEHNQLSGNIPSTNNSLLQHIFLGYNNLSGNLPSNICKGLPKLRTLDLSHNDFVGDMPTIWHQCENLEELKLSFNRFNKGPMPNEMGNLNKLQYLSLTTNNLEGGIPFSLFNITTLKSVNLGGNNLNGTLPSELCHSLPQLETFDLSNNQLEGNIPRSIGNCTSLTYLFLNDNHFIGSIPEDIGYLDHLVYLNVLNNRLSGPVAPKLFNISTLISLYLTNNSLSGTLPSDLGSGCPNLVYLQLRGNMFEGNIPKGIANASKLTEIDFLGNQFSGTIPDVFGGLTYLECLHLDNNKNLRLDDSFGFNFLTSLTGCTSLKYLSVSGTRLSKLPKSIGNLTVGYLWAYSCGIDGNLPPEIGNMKNLVMLSMSRNNLNGPIPRTIKELHLQYLDLEYNELQGSIVDELCEIKSLSNLYLSNNKLSGVLPTCLGNMKSLRNVRLGSNRLTSEIPSSFWSLKDINELNLSSNALIGNLPMEISKLRAVVQLDLSGNQISGNIPEIIGSLTTLQTLSLARNKLNGTIPASLGEMVILSFLDLSNNLLTGEIPKSFAKNGSLKSINFSYNMLQGEIPDGGQFKNLTAQSFMHNEALCGNPLLQVPPCDKHRRSIAKTILIKCMLPIIVSAILVAGCIILVLHKRKKVEHRAESDVSTIGVPKRISYYELVHATNGFSAINLLGKGSFGSVYQGMLSSGKMVAVKVIDLSFEATSKSFDVECNAMRNLRHRNLVEIITSCSHVDFKSLVMEFMSNGSVEKWLYSYNYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDKNMVAHVSDFGIAKLLDDGQSKIHTGTLATIGYVAPEYGSKGIVSIKGDVYSYGIMLMEMFTRKRPTDEMFAEELTLKTWISESMTNSVMEVVDSNLVQHHEKTIHDIVPHISSILALSLSCCADSPEERANMTDITASLIKIKNLFLQEKGNEDVKICL 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03924 1184 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 193 455 - -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 440 721 - -
Tsu08g03924 1184 SUPERFAMILY L domain-like 51 400 - -
Tsu08g03924 1184 Gene3D Ribonuclease Inhibitor 181 242 IPR032675 -
Tsu08g03924 1184 SUPERFAMILY Protein kinase-like (PK-like) 872 1164 IPR011009 -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 265 519 - -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 18 105 - -
Tsu08g03924 1184 Gene3D Ribonuclease Inhibitor 29 180 IPR032675 -
Tsu08g03924 1184 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1011 1023 IPR008271 GO:0004672|GO:0006468
Tsu08g03924 1184 Gene3D Ribonuclease Inhibitor 243 520 IPR032675 -
Tsu08g03924 1184 SMART LRR_typ_2 362 386 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 434 458 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 97 121 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 337 361 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 655 679 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 169 193 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 145 168 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 727 751 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 217 248 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 264 287 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 538 561 IPR003591 -
Tsu08g03924 1184 SMART LRR_typ_2 631 654 IPR003591 -
Tsu08g03924 1184 Pfam Leucine Rich Repeat 147 166 IPR001611 GO:0005515
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 709 1169 - -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 82 247 - -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 534 777 - -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 709 1169 - -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 82 247 - -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 534 777 - -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 265 519 - -
Tsu08g03924 1184 Gene3D Ribonuclease Inhibitor 521 830 IPR032675 -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 18 105 - -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 193 455 - -
Tsu08g03924 1184 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 440 721 - -
Tsu08g03924 1184 ProSiteProfiles Protein kinase domain profile. 892 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03924 1184 Pfam Leucine rich repeat 172 230 IPR001611 GO:0005515
Tsu08g03924 1184 Pfam Leucine rich repeat 657 716 IPR001611 GO:0005515
Tsu08g03924 1184 Pfam Leucine rich repeat 339 399 IPR001611 GO:0005515
Tsu08g03924 1184 Gene3D Transferase(Phosphotransferase) domain 1 968 1181 - -
Tsu08g03924 1184 SUPERFAMILY RNI-like 458 794 - -
Tsu08g03924 1184 Pfam Protein kinase domain 894 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03924 1184 SMART serkin_6 892 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03924 1184 ProSitePatterns Protein kinases ATP-binding region signature. 898 920 IPR017441 GO:0005524
Tsu08g03924 1184 Gene3D Phosphorylase Kinase; domain 1 875 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03924 Tsu-Chr8 57571212 57576634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03924 1 1182 Receptor kinase-like Gene Family AT5G46330 34.441 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu08g03924 Pkinase 7.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03924 - K13420 gmx:100784397 1142.1