Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03923 ATGGCCAAAAAACTATACTCTAGTGATTTTAATTTGCTCTGTATTCTCTCTGTCTCACTCTATTATTACTTCTTCATCACTTGCTTAGCTAAAAGTACTAAAAACATCACCACAGATGAATTTTCACTTCTTGCATTCAAATCATCTATTACCTTAGACCCTTATCATATACTTAGTAATTGGTCAATTTCCAAtaattcttcttctttctcttcatgCAATTGGGTTGGTGTTACTTGTGATGCACATCATGGAAGAGTAAATGCATTGAATCTTAGTAACATGGGTCTTGAAGGTACAATTTCTCCTCAACTAGGAAATCtctcttttcttgtttttcttgatcTACAAGGCAATAGTTTCCGTGGTATGTTACCACATGAGTTACTTCAATTGCATAGATTGAAATGGTTGGATTTGAATTCCAATGATTTTGTTGGAGAAATCCCTTTAAGGATAGGGGACTTATCAAAACTTCAATATTTAGATCTTGGTCATAATAATATTGTTGGGTTTATTCCTCAATCTATATCCAATTTATCAATGCTAGAGTACTTAGATTGGAAATCAAATTTCATCAAAGGAACTATTCCACATGTTATTAGTCAACTTGGTAGGTTGAGGATTTTGGATGTTAGAAATAACAAACTCTCTGGAATCATACCATCAACAATTTCCAACATGTCTTcacttgaagaaattcatttaTCAAATAATTCCTTATCAGGAGAAATTCCAAGAGGAATTGGTGATCTTACACAACTGAGCATTTTGAACCTTcaaaataatcttttctttGGCAACATATCATCAACAATATTAATGTTCAACAACTCATCATTGCAAAAGTTGGCACTTGGTTTAAACAACCTCACTGGCATTCTTCCATCAAATATTTGTCAAGGACTTCCAAACCTTAGATTACTATATCTTTATGCTAATGATTTTTCTGGTAAGATGCCAAATGTTTGGCGTTTTTGCAAAGAGTTAGAAGATTTGGAGCTATCCTTCAATAATTTTGACAAAGGACATCTGCCAGCTGACATTGGAAACTTGATCAAGCTTCAATCTTTGTATCTTAGAAGCATCAACTTGGAGGGTGAAATTCCACTCTCCCTCTTCAACATCTCTTCTTTAATCGAGATCAACCTTGATGGAAACAATTTAAATGGAACTCTTCCACGCGAGATGTGTAATCAACTTCCTCAACTTGAAATATTTACCTTATACGGTAACCATTTTGAAGGAACCATTCCACGATCAATTGGCAATTGTACATTATTGCAAACATTAACGTTACAGAACAACTTTTTTTCAGGTTCCATACCAATGGAGATTGGCAATCTCAATCAACTTCAGCTTCTACAAATGGGAAATAACAGCTTAAGTGGACCTATTCCTTCAAAAGTTTTCAACATTTCAACATTGGTATATTTGCATCTTGAACAAAATTCTTTCTCAGGCATGCTTCCATCAAATATGGGATTTGGCCTTCCTAACCTACAACAAATACACATATATGGAAACAAGCTTGTTGGAAAAATTCCAAATAGTATATCCAATGCTTCAAACCTAGAAATAATTGACTTGAGTTTGAATGAATTTAGTGGAAATATACCAAACTCATTTGGAAATTTAAGAGCCCTTGAATCACTTGTCATAGGTGGCAATAATTTGACAATAGATGATTCTCTTGAATTCAACTTCTTAACTTCACTAACAAGTTGCAGATATTTGAAACATCTTGAAGTATCAAAGATAAGTTTCCAATCAAAACTTCCCAAGTCCATTGGAAACTTAACTTTAGAACACTTTTGGGCAAATTCTTGTGGAATTAATGGAAATATTCCGCTAGAAATTGGAAACATGAGCAACCTGATTGGCTTATCTCTGAGTAGGAATGATTTAAACGGATCAATCCCAAGTACAATTAAAGGGCTACGTAAACTTCAATCTTTAGATCTTAGCTACAATGGACTGCAAGGATCTATAGTTTATGAGCTTTGTGAAATTAGGAGTTTGAGTGAGTTGAATTTAACAAACAATAAGCTTTTTGGAGTGTTGCCAACATGTTTGGGAAATATGACTTCACTTAGAAAGTTTGACTTAGGATCCAATAGGTTAACCTCTACAATACCTTCCTCATTTTGGACTCTCAAAGATGTTTTAGAGGTAAACTTATCCTCCAATGCTATAATTGGAAATCTTCCACCTGAGATTAAGAATTTGAGAGCTCTTGTATCATTAGATTTATCAAGAAATCAAATTTCAAGCAACATTCCATCAACCATAAGTTTCTTGACAACTTTAGAAACTCTGTCCTTAGCATACAACAAAATCAATGGGCCTATTCCAAAATCATTTGGTGAAATGGTAGGTTTGAGTTTCTTGGATTTGTCTCATAATCTTATAACTGGTGTGATTCCAAAATCTTTAGAGTCACTTTCTTATCTTAAATACATTAATCTTTCATACAATAGATTGCAAGGAGAGATTCCTCATGGAGGACCATTCAAAAAGTTCAATTCTCAATCTTTCATGCATAATGAAGCACTTTGTGGTAGCCCTTACTTACTAGTACCTCCATGTGATAAACAAATTTGgaaaaaatcaaagacaaagATGATATTAATCATTTGCATATCATCCATAATTGTTGTGTTGGGAATTTTTGCAATTGCATGCATAATACTTCAAAtgcagaaaaggaaaaaagttgaaattccaCTTGAAAAGGATTCATCAACTAATTTAGGGCTTTTAAGAAGGCTTTCCTATTCTGAACTTGTGCAAGCAACTAACGGATTCAGTGAGAGTAATTTACTTGGAAGAGGTGGATTTGGATCTGTGTATCAAGGAATGCTTTCTAGTGGAAAGATGGTAGCAATTAAAGTACTTGATTTGAAATTAGAAGCAACATCAAGAAGCTTTGATGCAGAATGCAATGCTATGCGTAATCTTCGACATCGAAATCTTGTTGAGATTATTACTAGTTGTTCAAATGTTAATTTCAAATCTCTGGTCATGGAGTTTATGTCAAATGGAAGCTTGGAAAAATGGTTATACTCAAATAACCATTGTTTAGGTTTCTTGCAAAGGTTGAATATAATGATAGATGTAGCATCTGCATTGGAGTATCTTCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTGTTACTAGATGAAAATATGGTTGCACATGTCGGTGATTTCGGAATTTCCAAGCTCTTGGATGAAGGACATTCTAAAGCTCATACTCAAACTTTAGCTACAATTGGCTATGTTGCACCAGAGTATGGATCTAAAGGAGTTGTTTCTATTAAAGGAGATGTGTATAGCTATGGAATAATGTTAATGGAAACGTTCACAGGAAAGAAGCCAACAAGTGAAATGTTTTCGGAAGAATTAACATTGAAAATTTGGATTAGTGAATCAATGCAAAATTCAATTATGGAGGTTGTTGATTGCAATTTAGTCTCACAACATGGAAAAGAAATTCAAGATATTTTAGTTCATGTATCATCTATTTTGGCTTTGGCTTTGAGATGTTGCGAAGATTTACCTGAGGCACGAGTTAGTATGACACATGTAACTGCATCATTGATCAAGATCAAAACCTTATTCATCTAA 3651 0.3281 MAKKLYSSDFNLLCILSVSLYYYFFITCLAKSTKNITTDEFSLLAFKSSITLDPYHILSNWSISNNSSSFSSCNWVGVTCDAHHGRVNALNLSNMGLEGTISPQLGNLSFLVFLDLQGNSFRGMLPHELLQLHRLKWLDLNSNDFVGEIPLRIGDLSKLQYLDLGHNNIVGFIPQSISNLSMLEYLDWKSNFIKGTIPHVISQLGRLRILDVRNNKLSGIIPSTISNMSSLEEIHLSNNSLSGEIPRGIGDLTQLSILNLQNNLFFGNISSTILMFNNSSLQKLALGLNNLTGILPSNICQGLPNLRLLYLYANDFSGKMPNVWRFCKELEDLELSFNNFDKGHLPADIGNLIKLQSLYLRSINLEGEIPLSLFNISSLIEINLDGNNLNGTLPREMCNQLPQLEIFTLYGNHFEGTIPRSIGNCTLLQTLTLQNNFFSGSIPMEIGNLNQLQLLQMGNNSLSGPIPSKVFNISTLVYLHLEQNSFSGMLPSNMGFGLPNLQQIHIYGNKLVGKIPNSISNASNLEIIDLSLNEFSGNIPNSFGNLRALESLVIGGNNLTIDDSLEFNFLTSLTSCRYLKHLEVSKISFQSKLPKSIGNLTLEHFWANSCGINGNIPLEIGNMSNLIGLSLSRNDLNGSIPSTIKGLRKLQSLDLSYNGLQGSIVYELCEIRSLSELNLTNNKLFGVLPTCLGNMTSLRKFDLGSNRLTSTIPSSFWTLKDVLEVNLSSNAIIGNLPPEIKNLRALVSLDLSRNQISSNIPSTISFLTTLETLSLAYNKINGPIPKSFGEMVGLSFLDLSHNLITGVIPKSLESLSYLKYINLSYNRLQGEIPHGGPFKKFNSQSFMHNEALCGSPYLLVPPCDKQIWKKSKTKMILIICISSIIVVLGIFAIACIILQMQKRKKVEIPLEKDSSTNLGLLRRLSYSELVQATNGFSESNLLGRGGFGSVYQGMLSSGKMVAIKVLDLKLEATSRSFDAECNAMRNLRHRNLVEIITSCSNVNFKSLVMEFMSNGSLEKWLYSNNHCLGFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVGDFGISKLLDEGHSKAHTQTLATIGYVAPEYGSKGVVSIKGDVYSYGIMLMETFTGKKPTSEMFSEELTLKIWISESMQNSIMEVVDCNLVSQHGKEIQDILVHVSSILALALRCCEDLPEARVSMTHVTASLIKIKTLFI 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03923 1216 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 10 156 - -
Tsu08g03923 1216 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 155 247 - -
Tsu08g03923 1216 Pfam Leucine Rich Repeat 158 180 IPR001611 GO:0005515
Tsu08g03923 1216 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1055 1067 IPR008271 GO:0004672|GO:0006468
Tsu08g03923 1216 SUPERFAMILY L domain-like 325 594 - -
Tsu08g03923 1216 Pfam Protein kinase domain 937 1205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03923 1216 SMART LRR_sd22_2 449 475 - -
Tsu08g03923 1216 SMART LRR_sd22_2 204 230 - -
Tsu08g03923 1216 SMART LRR_sd22_2 743 762 - -
Tsu08g03923 1216 SMART LRR_sd22_2 156 182 - -
Tsu08g03923 1216 SMART LRR_sd22_2 767 782 - -
Tsu08g03923 1216 SMART LRR_sd22_2 791 817 - -
Tsu08g03923 1216 SMART LRR_sd22_2 647 679 - -
Tsu08g03923 1216 SMART LRR_sd22_2 695 716 - -
Tsu08g03923 1216 Gene3D Ribonuclease Inhibitor 277 563 IPR032675 -
Tsu08g03923 1216 SUPERFAMILY L domain-like 603 857 - -
Tsu08g03923 1216 Gene3D Ribonuclease Inhibitor 564 870 IPR032675 -
Tsu08g03923 1216 SMART LRR_typ_2 449 473 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 695 719 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 743 767 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 791 814 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 204 227 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 228 252 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 108 132 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 671 694 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 498 522 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 156 180 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 401 425 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 303 326 IPR003591 -
Tsu08g03923 1216 SMART LRR_typ_2 376 400 IPR003591 -
Tsu08g03923 1216 Pfam Leucine rich repeat 672 732 IPR001611 GO:0005515
Tsu08g03923 1216 Pfam Leucine rich repeat 206 264 IPR001611 GO:0005515
Tsu08g03923 1216 Pfam Leucine rich repeat 745 804 IPR001611 GO:0005515
Tsu08g03923 1216 Pfam Leucine rich repeat 499 559 IPR001611 GO:0005515
Tsu08g03923 1216 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 207 341 - -
Tsu08g03923 1216 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 329 440 - -
Tsu08g03923 1216 ProSitePatterns Protein kinases ATP-binding region signature. 942 964 IPR017441 GO:0005524
Tsu08g03923 1216 Pfam Leucine rich repeat N-terminal domain 38 81 IPR013210 -
Tsu08g03923 1216 Gene3D Ribonuclease Inhibitor 199 276 IPR032675 -
Tsu08g03923 1216 Gene3D Ribonuclease Inhibitor 36 198 IPR032675 -
Tsu08g03923 1216 SMART serkin_6 936 1215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03923 1216 SUPERFAMILY Protein kinase-like (PK-like) 917 1208 IPR011009 -
Tsu08g03923 1216 SUPERFAMILY L domain-like 67 399 - -
Tsu08g03923 1216 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 155 247 - -
Tsu08g03923 1216 Gene3D Transferase(Phosphotransferase) domain 1 1012 1214 - -
Tsu08g03923 1216 ProSiteProfiles Protein kinase domain profile. 936 1216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03923 1216 Gene3D Phosphorylase Kinase; domain 1 918 1011 - -
Tsu08g03923 1216 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 403 1215 - -
Tsu08g03923 1216 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 207 341 - -
Tsu08g03923 1216 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 329 440 - -
Tsu08g03923 1216 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 156 - -
Tsu08g03923 1216 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 403 1215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03923 Tsu-Chr8 57560763 57567384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03923 599 836 Receptor kinase-like Gene Family AT3G47570 31.667 7.92e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu08g03923 Pkinase 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03923 - K13420 gmx:100784397 1245.34