Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03922 ATGGTCAAACTATCCTCTTGTGACTCTTGGCTCTGTATTTTCTCTGTCTCACTCTATTATTACTTCTTCTTCACTTGCTTAGCTAAAAGTACTAAAAACATCACCACAGATGAATTTTCACTTCTTGCATTCAAATCCTCTATTACCTTAGACCCTTATCATATACTTCATAATTGGTCAATTTCCAAtaattcttcttctttctcttcatgCAATTGGGTTGGTGTTACTTGTGATGCACATCATGGAAGAATAAATGCATTGAATCTTAGTAACATGGGTCTTGAAGGTACAATTTCTCCTCAACTAGGAAATCtctcttttcttgtttttcttgatcTACAAGGCAATAGTTTCCATGGTATGTTACCACAAGAGTTACTTCAATTGCATAGATTGAAATGGTTGGATTTGAGCAACAATGAttttgttggagaaattccaTCAAGGATAGGGTACTTATCCAAACTTCAATATTTAGATCTtggttataataatattgttggATTTATTCCTCAATCTATATCCAATTTGTCAATGTTGGAATACTTAGATTGGAAATCAAATTTCATCAAAGGAACTATTCCACATGTTATTGGTCAACTTTATCGGTTGAAAATTTTGGATATTAGAAATAACAAGCTCTCTGGAATCATACAATCAACAATTTCAAACATGACTTCACTTGAAGAAATCTATTTATCTAATAACTCCTTATCAGGAGAAATTCCAAAAGAAATTGGTGATCTTACACAATTGAGAATTATGAACCTCCAATATAATCTTCTCACAGGCAGCATATTGTTCATGTTCAACAACTCATCGTTGCAATACATGTATCTTGGTTTTAATAATCTATCTGGTATTCTTCCATCAAATGTTTGTCAAGGGATTCCAAACCTTAGATATCTCTATCTTTTTGCTAATGATCTTTCTGGTGAGATGCCAAAAATTTGGCGTAATTGCAAAGAATTGGAAGATTTAGAGCTATCCTACAATAATTTTGACAAAGGACATTTGCCAGCAGAAATTGCAAAATTAGCCAAGCTTCAATATTTATATCTTTCTAAAAACAACTTGGAGGGTGAAATCCCATTTTCCCTCTTCAACAACTCTTCTTTGATAGAGGTCGACCTTGACATAAACAATTTAAATGGAAGTCTACCACATGAGATGTGTCATCAACTTCCTCAACTTGAAATATTGACTCTACATGTTAATCATTTTGGAGGCATTATTCCACGATCAATTGGCAACTGCACATCGTTACAAATGTTAAGTTTAGAAGATAACTTTTTTATAGGTTCAATACCGATGGAAATTGGTCATCTCAATCAACTTCAATCTCTACAATTGGGAAATAATAGCTTGAGTGGACCTATTCCTTCAAAAGTCCTCAACATTTCAACATTGAAAAGTTTGGAACTTGAACTAAATTCTCTCTCAGGAAATCTTCCATCAAATATGGGAATTGGCCTTCCAAACCTACAACtattatacatatatgaaaACAAATTTGTTGGAAAAATTCCGGATAGTATATCCAATGCTTCAAATCTCATTCGACTTGACTTGAGTGGAAATAAATTTAGTGGAATTATACCAAATTCTTTTGGAGATTTAAGAGTCATCGAATTCCTAGTCATAGCTGGCAATAATTTGACATTAAATGATGATTCTCTTGAAACAAACTTGCTTACTTCACTTACAGATTGTAGATATCTTGCATATCTTGAAGTATCAGAGAATAGGTTATCAAAACTTCCAAAGTCCATTGGAAATTTATCATTAGAGCACTTTTACGCAGATTCTTGTGGAATTAATGGAAATATTCCACTAGAAATTGGAAACATGAGTAACATGATTCAATTATCTCTTAGTACGAATGATTTAAATGGATCAATCCCTAGTACAATTAAAAGGACGCATCAAGTTCAATATTTGAATCTTGAATACAATGGACTACAGGGATATATAATTCATGAGCTATGTGAAGTGAGCAGTTTGAGTGAGTTGTATTTAACAAGCAATAAGCTTTTTGGTGAGTTACCAAAATGCTTGGGAAACATGACTTCTCTTAGAAAGTTTCACATAGGATCTAATGAGTTCACCTCAATGATACCTTTCTCTTTTTGGAATCTTGAAGATATTTTAGAGGTAAACTTATCCTCTAATGCTTTAATTGGATATCTTCCACCTGAAATTAAGAATTTAAGAGCGCTTATACTATTAGATCtctccaaaaatcaaatttcaagcAACATTCCAACAGCCATAAGTTTTTTGAGAACTTTAGAAACTCTCTCCTTAGCAAATAACAAATTGAATGGTTTTATTCCAACAACACTTGGTGAAATGTTTAGTTTGAGTTTCTTGGACCTGTCTCAAAATCTTATAAGTGGTGTGATTCCAAAATCATTAGAGTTACTTCCTTCTCttaaattcataaatttatCATACAATAGATTGCAAGGAGAGATTCCTGATGGAGGACCTTTCAAAAGCTTAACTGATCAATCTTTCATGCATAATGAAGCACTTTGTGGCAATCCTCGCTTACAAGTTCCTCCATGTGATAAACAAATTAGGAAAAAGTCAAAGACAAAGATGCTATTAATCATATGCATAACATCAACATTTGTTGTGTTATGCATTTTGGTTGTTGCATGCATAATACTGAGGAGGCATAAAACGAAAAAGCTTAAAAATCCACTTAAAAGTGAGTTGTCAGATAATTTAGGGGCTCCAAGAAGAATATCCTACTATGAACTTGTGAAAGCAACTAATGGATTCAGTGAAAGTAATTTACTTGGAAAGGGTGGCTTTGGATCTGTGTATCAAGGAATTCTTTCTAGTGGAAAGATGGTGGCAATTAAAGTACTTGACTTGACATTGGAAGCAACATCAAGGAGCTTTGATGCAGAATGTAATGCAATGCGCAACCTTCGACATCGAAATCTGGTGCAGGTTATTAGTAGTTGTTCAAATGATGATTTCAAATCTCTGGTGATGGAATTTATGTCAAACGGAAGTGTGGAAAAATGGTTATACTCAAAGAACTATTGTTTGAATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATATGCATTGGAGTATCTACATCATGGTTCTTCAATGCCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTTTTACTAGATGAAGATATGGTTGCGCATGTCAGTGATTTTGGCATTTCCAAGCTCTTGGATAAAGGACAATCTAAAACTCACACCCAGACTTTAGCTACTCTTGGTTATGTTGCACCAGGTTATTTCTTCACTCCTAACTCTTAA 3324 0.3252 MVKLSSCDSWLCIFSVSLYYYFFFTCLAKSTKNITTDEFSLLAFKSSITLDPYHILHNWSISNNSSSFSSCNWVGVTCDAHHGRINALNLSNMGLEGTISPQLGNLSFLVFLDLQGNSFHGMLPQELLQLHRLKWLDLSNNDFVGEIPSRIGYLSKLQYLDLGYNNIVGFIPQSISNLSMLEYLDWKSNFIKGTIPHVIGQLYRLKILDIRNNKLSGIIQSTISNMTSLEEIYLSNNSLSGEIPKEIGDLTQLRIMNLQYNLLTGSILFMFNNSSLQYMYLGFNNLSGILPSNVCQGIPNLRYLYLFANDLSGEMPKIWRNCKELEDLELSYNNFDKGHLPAEIAKLAKLQYLYLSKNNLEGEIPFSLFNNSSLIEVDLDINNLNGSLPHEMCHQLPQLEILTLHVNHFGGIIPRSIGNCTSLQMLSLEDNFFIGSIPMEIGHLNQLQSLQLGNNSLSGPIPSKVLNISTLKSLELELNSLSGNLPSNMGIGLPNLQLLYIYENKFVGKIPDSISNASNLIRLDLSGNKFSGIIPNSFGDLRVIEFLVIAGNNLTLNDDSLETNLLTSLTDCRYLAYLEVSENRLSKLPKSIGNLSLEHFYADSCGINGNIPLEIGNMSNMIQLSLSTNDLNGSIPSTIKRTHQVQYLNLEYNGLQGYIIHELCEVSSLSELYLTSNKLFGELPKCLGNMTSLRKFHIGSNEFTSMIPFSFWNLEDILEVNLSSNALIGYLPPEIKNLRALILLDLSKNQISSNIPTAISFLRTLETLSLANNKLNGFIPTTLGEMFSLSFLDLSQNLISGVIPKSLELLPSLKFINLSYNRLQGEIPDGGPFKSLTDQSFMHNEALCGNPRLQVPPCDKQIRKKSKTKMLLIICITSTFVVLCILVVACIILRRHKTKKLKNPLKSELSDNLGAPRRISYYELVKATNGFSESNLLGKGGFGSVYQGILSSGKMVAIKVLDLTLEATSRSFDAECNAMRNLRHRNLVQVISSCSNDDFKSLVMEFMSNGSVEKWLYSKNYCLNFLQRLNIMIDVAYALEYLHHGSSMPVVHCDLKPSNVLLDEDMVAHVSDFGISKLLDKGQSKTHTQTLATLGYVAPGYFFTPNS 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03922 1107 SMART LRR_typ_2 202 225 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 154 178 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 347 371 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 298 321 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 444 468 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 810 834 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 226 250 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 106 130 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 493 517 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 738 762 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 786 809 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 518 540 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 690 713 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 274 297 IPR003591 -
Tsu08g03922 1107 SMART LRR_typ_2 396 420 IPR003591 -
Tsu08g03922 1107 Gene3D Ribonuclease Inhibitor 490 555 IPR032675 -
Tsu08g03922 1107 Gene3D Ribonuclease Inhibitor 296 392 IPR032675 -
Tsu08g03922 1107 Gene3D Ribonuclease Inhibitor 192 295 IPR032675 -
Tsu08g03922 1107 Gene3D Ribonuclease Inhibitor 393 489 IPR032675 -
Tsu08g03922 1107 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 398 1101 - -
Tsu08g03922 1107 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 337 438 - -
Tsu08g03922 1107 SMART serkin_6 931 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03922 1107 Gene3D Phosphorylase Kinase; domain 1 914 1006 - -
Tsu08g03922 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 204 336 - -
Tsu08g03922 1107 Pfam Leucine rich repeat N-terminal domain 36 79 IPR013210 -
Tsu08g03922 1107 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 204 336 - -
Tsu08g03922 1107 SUPERFAMILY RNI-like 493 828 - -
Tsu08g03922 1107 SUPERFAMILY L domain-like 65 389 - -
Tsu08g03922 1107 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 153 244 - -
Tsu08g03922 1107 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 23 154 - -
Tsu08g03922 1107 Pfam Protein kinase domain 932 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03922 1107 SUPERFAMILY Protein kinase-like (PK-like) 914 1104 IPR011009 -
Tsu08g03922 1107 SUPERFAMILY L domain-like 383 507 - -
Tsu08g03922 1107 Pfam Leucine rich repeat 763 823 IPR001611 GO:0005515
Tsu08g03922 1107 Pfam Leucine rich repeat 494 554 IPR001611 GO:0005515
Tsu08g03922 1107 Pfam Leucine rich repeat 204 263 IPR001611 GO:0005515
Tsu08g03922 1107 ProSitePatterns Protein kinases ATP-binding region signature. 937 959 IPR017441 GO:0005524
Tsu08g03922 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 153 244 - -
Tsu08g03922 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 23 154 - -
Tsu08g03922 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 337 438 - -
Tsu08g03922 1107 ProSiteProfiles Protein kinase domain profile. 931 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03922 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 398 1101 - -
Tsu08g03922 1107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1050 1062 IPR008271 GO:0004672|GO:0006468
Tsu08g03922 1107 Gene3D Ribonuclease Inhibitor 556 867 IPR032675 -
Tsu08g03922 1107 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
Tsu08g03922 1107 Pfam Leucine Rich Repeat 156 178 IPR001611 GO:0005515
Tsu08g03922 1107 SMART LRR_sd22_2 738 757 - -
Tsu08g03922 1107 SMART LRR_sd22_2 444 470 - -
Tsu08g03922 1107 SMART LRR_sd22_2 202 220 - -
Tsu08g03922 1107 SMART LRR_sd22_2 226 252 - -
Tsu08g03922 1107 SMART LRR_sd22_2 347 379 - -
Tsu08g03922 1107 SMART LRR_sd22_2 154 180 - -
Tsu08g03922 1107 Gene3D Transferase(Phosphotransferase) domain 1 1007 1106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03922 Tsu-Chr8 57543173 57549347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03922 16 1103 Receptor kinase-like Gene Family AT5G46330 32.449 1.45e-159 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu08g03922 Pkinase 3.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03922 - K13420 gmx:100784397 1134.01