Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03906 ATGAGTAATAAAAAGAACATCACCACAGATGAATTTGCACTTCTTGCATTCAAATCATCTATTACCTTAGACCCTTTTCATATGCTTAGTAATTGGTCAATTTCCTCTTCTACTTCATGCAATTGGCTTGGTGTCACTTGTGATGAGCGTCATGGAAGAGTAAGGGCATTGAATCTTGGTAACATGGACCTTAAAGGTACCATTTCTCCTCAATTGGGAAATCTCTCTTTCCTTGTTGATCTTCATCTAAATGGCAATAGTTTCCATGGTGAGTTACCACATGAGTTACTTCAGTTGAAGAGATTGAAATTGTTGAATTTGAGCTACAATAGttttgttggagaaattcctTCAAGGATAGGTGAATTATCAAAACTTCAACAATTGGATCTTGGctataataattttgttggatttattccTCAATCTATATCCAATTTGTCAATGTTAGAATATCTAAGTTTGAACTCAAATTTCATGAAAGGAACTATTCCACATGTTATTAGTCAACTTGGTAGGTTGAGGATTTTGGATGTTAGAAATAACAAGCTCTCTGGAACCATACCATCAACAATTTCTGACATGTCTTcacttgaagaaattcatttaTCAAATAATACCTTATCAGGAGAAATTCCAAAAGGAATCAGTGATCTTACACAGTTGAGAATTGTGAACCTTAAACAGAATATGTTCACAGGAAACATACTTATGTTCAACAGCACATCATTGCAATACTTATaccttaataataataatttgagtgGCATTCTTCCATCAAATATTTGTCAAGGGCTTCCAAATCTTAGATCACTCTATCTTTACCTTAATGATTTTTATGGTGAGATGCCAAAAGTTTGGCGTTATTGCAAACAGTTGGAAGATTTGGAACTATCGGGCAATAATTTTGACAAAGGACCTATACCACCTGACATTGGAAACTTGACCAAGCTTCGATCTTTGTATCTTACTTTAACCAACTTGCATGGAGAAATTCCATCTTCTCTCTTCAACATCTCTTCTTTGGTGAATATCGTACTTGACAGAAACAACTTAAAAGGAAGACTCCCACACGAGATGTGTCATCAATTTTCCCAACTTCAGACTTTTTCTCTAAACTCTAATGATTATAGAGGAATCATTCCACGATCGATTGGAAATTGCACATTTTTACAATCTTTCAGTTTAAGTAATAACTTTCTTACAGGTTCGATACCAATGGAGATCGGCCATCTCAATCAACTCCAAACTTTACAATTGGCAAATAACAGGTTGAGTGGACCTATTCCTTCAAAGCTCTTCAACATTTCAACAttggaattttttattcttgGTCAAAATTATCTCTCAGGCATGCTTCCATCAAATATGGGATTTGGTCTTCCAAACCTACAACACCTAAacatatatgaaaacaattttgttGGAAAAATTCCAGATAGTATATCCAATATTTCAAATCTCATTCGACTTGACTTGAGTGAAAATGAATTTAGTGGAATTATACCCAATTCTTTTGGAGATTTAACAGTCATCGAATTCCTAGTCATAGCtgaaaataatttgacattAAATGATGATACTCTTGAAATAAACTTCCTTACTTCACTTACTAGTTGCAGATATCTTGCATATCTTGATATATCAGGGAATAGGTTAACAAAACTTCCCAAGTCCATTGGAAACTCATCATTAGAACGTTTTCGGGCATATTCTTGTGGAATTAATGGAAATATTCCCCTAGAAATAGGAAATATGAGCAACCTGATTGAATTATCTCTGAGTGGGAATGATTTAAATGGATCAATCCCTAGTACAATAAAAAGGTCACATCAACTTCAATATTTGGATCTTGGCTACAATGGACTGCAAGGATCTATAGTTCATGAGCTTTGTGAAGTTGGCAGTTTGAGTGAGTTGTATTTAACAAGCAATAAGCTTTTTGGTGTGTTACCAACATGCTTGGGAAATATGACTTCTCTTAGAAAGTTTCATATAGGATTTAACAAGTTGACCTCAGTGATACCATTCTCTTTTTGGAATCTCAATGATATTTTAGAGGTAAACTTAACCTCTAATGCGTTAATTGGAAATCTTCCGCTTGAGATTAAGAATTTAAGAGCTCTTACACTATTAGATCtctccaaaaatcaaatttcaagcAACATTCCAACAGCGATAAGCTTATTGAGAACTTTAGAAACTCTCTCCTTAGCAAATAACAAATTGAATGGTTCTATTCCAACATCACTTGGTGAAATGTTTAGTTTGAGTTTCTTGGACTTGTCTCAAAATCTTATAACTGGTGTGATTCCAAAATCATTTGAGTCACTTTCTTCTCTTAAGTACATAAATCTATCATACAATAGATTGCAAGGAGAGATTCCTGAGGGAGGACCATTCAAAAGCTTCACAGCTCAATCTTTCATGCATAATGACGCGCTTTGTGGTAATCCTCGCTTACAAGTTCCTCTATGTATGACAAagtcaaagaaaaagaagttatttatcaaatttataTTGCCCGTAATTGTTGTGTTAGGCATTTTGGTTGTTGCATGCATAATACTTGGaattcataaaaagaaaaaggttgaaAATCCACATAAAAGTGATTTGTCAGCTACTTTAGGGGTTCCAAGAAGAATATCCTACTATGAACTTGTGAAAGCAACTAATGGATTCGGTGAAAGTAATTTACTTGGAAGAGGTGGCTTTGGATCTGTGTATCGAGGAATTCTTTCTAGTGGGAAGATTGTGGCAATTAAAGTACTTGACTTGACATTGGAAGCAACATCCAAAAGCTTTGATGCAGAATGTAATGCAATGCGCAACCTTCGCCATCGAAATCTGGTTCAAGTTATTAGTAGTTGTTCAAATGATGATTTCAAATCTCTAGTGATGGAGTTTATGTCAAACGGTAGTGTGGAAAAATGGTTATACTCAGAGAACTATTGTTTGAATTTCTTACAAAGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAATATCTACATCATGGTTCTTCGATACCAGTGGTTCATTGTGATTTAAAGCCTAGTAATGTTTTACTAGATGAAGATATGGTTGCGCATGTTAGTGATTTTGGCATTTCCAAGCTCTTGGATGAAGGACAATCAAAAACTCATACCCAAACTTTAGCTACTCTTGGTTATGTTGCACCAGAGTATGGATCTAAAGGAGTCATTTCAGTTAAAGGAGATGTGTATAGTTATGGGATAATGTTAATGGAAATGTTCACAGGAAAGAAGCCAACAAATGAAATGTTTTCAGAAGAATTAACCTTGAAAACTTGGATTAGTGAATCAATGGTCAATTCAGTTATGGAAGTTGTGGATTACAATTTAGTCTCACAACATGAGAAAGAACTTCatgaaattttagttttagCTTTGAGTTGCTGTGCAGATTCACCTGAGGCAAGAATTAAAATGACAGATGTAACTGCATCGTTAATCAAAATCAAGACCTTAGTCATGCGGTGA 3510 0.3296 MSNKKNITTDEFALLAFKSSITLDPFHMLSNWSISSSTSCNWLGVTCDERHGRVRALNLGNMDLKGTISPQLGNLSFLVDLHLNGNSFHGELPHELLQLKRLKLLNLSYNSFVGEIPSRIGELSKLQQLDLGYNNFVGFIPQSISNLSMLEYLSLNSNFMKGTIPHVISQLGRLRILDVRNNKLSGTIPSTISDMSSLEEIHLSNNTLSGEIPKGISDLTQLRIVNLKQNMFTGNILMFNSTSLQYLYLNNNNLSGILPSNICQGLPNLRSLYLYLNDFYGEMPKVWRYCKQLEDLELSGNNFDKGPIPPDIGNLTKLRSLYLTLTNLHGEIPSSLFNISSLVNIVLDRNNLKGRLPHEMCHQFSQLQTFSLNSNDYRGIIPRSIGNCTFLQSFSLSNNFLTGSIPMEIGHLNQLQTLQLANNRLSGPIPSKLFNISTLEFFILGQNYLSGMLPSNMGFGLPNLQHLNIYENNFVGKIPDSISNISNLIRLDLSENEFSGIIPNSFGDLTVIEFLVIAENNLTLNDDTLEINFLTSLTSCRYLAYLDISGNRLTKLPKSIGNSSLERFRAYSCGINGNIPLEIGNMSNLIELSLSGNDLNGSIPSTIKRSHQLQYLDLGYNGLQGSIVHELCEVGSLSELYLTSNKLFGVLPTCLGNMTSLRKFHIGFNKLTSVIPFSFWNLNDILEVNLTSNALIGNLPLEIKNLRALTLLDLSKNQISSNIPTAISLLRTLETLSLANNKLNGSIPTSLGEMFSLSFLDLSQNLITGVIPKSFESLSSLKYINLSYNRLQGEIPEGGPFKSFTAQSFMHNDALCGNPRLQVPLCMTKSKKKKLFIKFILPVIVVLGILVVACIILGIHKKKKVENPHKSDLSATLGVPRRISYYELVKATNGFGESNLLGRGGFGSVYRGILSSGKIVAIKVLDLTLEATSKSFDAECNAMRNLRHRNLVQVISSCSNDDFKSLVMEFMSNGSVEKWLYSENYCLNFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDEDMVAHVSDFGISKLLDEGQSKTHTQTLATLGYVAPEYGSKGVISVKGDVYSYGIMLMEMFTGKKPTNEMFSEELTLKTWISESMVNSVMEVVDYNLVSQHEKELHEILVLALSCCADSPEARIKMTDVTASLIKIKTLVMR 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03906 1169 SMART LRR_typ_2 461 484 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 171 194 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 754 777 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 634 657 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 778 802 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 123 147 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 315 339 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 75 99 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 485 508 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 658 681 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 195 219 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 242 265 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 586 610 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 534 563 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 706 730 IPR003591 -
Tsu08g03906 1169 SMART LRR_typ_2 412 436 IPR003591 -
Tsu08g03906 1169 Pfam Leucine Rich Repeat 243 263 IPR001611 GO:0005515
Tsu08g03906 1169 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515
Tsu08g03906 1169 Gene3D Transferase(Phosphotransferase) domain 1 971 1167 - -
Tsu08g03906 1169 ProSitePatterns Protein kinases ATP-binding region signature. 901 923 IPR017441 GO:0005524
Tsu08g03906 1169 SUPERFAMILY RNI-like 460 797 - -
Tsu08g03906 1169 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1014 1026 IPR008271 GO:0004672|GO:0006468
Tsu08g03906 1169 SMART serkin_6 895 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03906 1169 Gene3D Ribonuclease Inhibitor 459 525 IPR032675 -
Tsu08g03906 1169 Gene3D Ribonuclease Inhibitor 165 263 IPR032675 -
Tsu08g03906 1169 Gene3D Ribonuclease Inhibitor 264 361 IPR032675 -
Tsu08g03906 1169 Gene3D Ribonuclease Inhibitor 362 458 IPR032675 -
Tsu08g03906 1169 Gene3D Ribonuclease Inhibitor 7 164 IPR032675 -
Tsu08g03906 1169 SUPERFAMILY L domain-like 19 353 - -
Tsu08g03906 1169 Pfam Leucine rich repeat 636 695 IPR001611 GO:0005515
Tsu08g03906 1169 Pfam Leucine rich repeat 173 231 IPR001611 GO:0005515
Tsu08g03906 1169 Pfam Leucine rich repeat 462 522 IPR001611 GO:0005515
Tsu08g03906 1169 Pfam Leucine rich repeat 757 792 IPR001611 GO:0005515
Tsu08g03906 1169 Gene3D Ribonuclease Inhibitor 526 835 IPR032675 -
Tsu08g03906 1169 Pfam Protein kinase domain 898 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03906 1169 SUPERFAMILY Protein kinase-like (PK-like) 873 1160 IPR011009 -
Tsu08g03906 1169 ProSiteProfiles Leucine-rich repeat profile. 243 264 IPR001611 GO:0005515
Tsu08g03906 1169 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 126 - -
Tsu08g03906 1169 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 363 1165 - -
Tsu08g03906 1169 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 174 303 - -
Tsu08g03906 1169 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 290 375 - -
Tsu08g03906 1169 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 125 214 - -
Tsu08g03906 1169 SUPERFAMILY L domain-like 314 455 - -
Tsu08g03906 1169 Gene3D Phosphorylase Kinase; domain 1 878 970 - -
Tsu08g03906 1169 ProSiteProfiles Protein kinase domain profile. 895 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03906 1169 Pfam Leucine rich repeat N-terminal domain 9 48 IPR013210 -
Tsu08g03906 1169 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 5 126 - -
Tsu08g03906 1169 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 363 1165 - -
Tsu08g03906 1169 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 174 303 - -
Tsu08g03906 1169 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 290 375 - -
Tsu08g03906 1169 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 125 214 - -
Tsu08g03906 1169 SMART LRR_sd22_2 706 725 - -
Tsu08g03906 1169 SMART LRR_sd22_2 610 633 - -
Tsu08g03906 1169 SMART LRR_sd22_2 754 780 - -
Tsu08g03906 1169 SMART LRR_sd22_2 123 149 - -
Tsu08g03906 1169 SMART LRR_sd22_2 658 679 - -
Tsu08g03906 1169 SMART LRR_sd22_2 171 203 - -
Tsu08g03906 1169 SMART LRR_sd22_2 412 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03906 Tsu-Chr8 57373826 57398079 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03906 575 815 Receptor kinase-like Gene Family AT3G47570 32.099 2.29e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu08g03906 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03906 - K13420 mtr:MTR_6g040210 1213.36