Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03900 ATGCTTAGTAATTGGTCAATTTCCTCTTCTTTCTCATCATGCAATTGGGTTGGTGTCACTTGTGATGAGCATCATGGAAGAGTAAGGGCATTGAATCTTGGTAACATGAGCCTTAAAGGTACCATTTCTCCTCAATTGGGAAATCTTTCCTTCCTTGTTGTTCTTGATCTACATGGCAATTATTTCCATGGTGAGTTACCACATGAGTTAGTTCACTTGAAGAGATTgaaattgttgaatttgaacaacaatgattttgttggagaaattccaTCAAGGATAGGGTACTTATCCAAACTTCAATATTTGCATCTTGGCTATAATAATATTGCTGGATTTATTCCACAATCAATATCCAATTTGACAATGTTAGAGTATCTAAATTTGAACTCAAATCTCATCAAAGGAACCATTCCGAATGTTATTGGTCAACTTCGTCGGTTGAGGATTTTGCATATCAGTAACATTAAGCTGTTATCTGGAATCATACCAAACACAGTTTCCAACATGTCTTCCGTTGAAGAAATCTACTTAACAAATAACTCCTTATCGGGAGAAATTCCGAAAGAAATCGGTGATCTTGTACGGTTGAGAATTGTGAATCTTCAATATAATATGCTCAAAGGCAACATACGTATGTTCAACAACACATCATTGCAATACTTATACCTTGGTTATAATAATTTGAGTGGCATTCTTCCATCAAATATTTGTCAAGGGCTACCAAATATTAGATCACTCTATCTTTATGCTAATGATTTTTATGGTGAGATGCCAAAAGTTTGGCGTTATTGCAAAGAGTTGGAAGATTTGGAACTATCTGAAATTAATTTTGACAAAGGACGTATGCCACCTGACATTGGAAAATTGAACAAGCTTCAATATTTGTTTCTTCCTTCAACCAACTTGCAGGGTTCGATACCAATGGAGATTGGCCATCTCAATCAACTCACAAATTTACAATTGTCAAATAACAGCTTGAGTGGACCTATTCCTTCAAAAATCCTCAACATTTCAACATTGGAAGTTTTGGCTCTACAAGAAAATTATCTCTCAGGCATGCTTCCATCAGATATGGGATTTGGTCTTCCTAACCTACAATACCTATACTTATCTAGAAACAACTTTGTTGGTAAAATTCCAGAGAGTATATCCAATGCTTCAAATCTCGTGCGACTTCAATTGGATGAAAATGAATTTAGTGGAATTATACCAAATTCTTTTGGAGATTTAAGACTCATCGAATTCCTCGTCATAGGTAGCAATAATTTGACATTAAATGATGATTCTCTTGAAATAAACTTTCTTACTTCACTTACTAGTTGCAGATATCTTGCATATCTTGATGTATCAGAGAATAGGTTATCAAAACTTCCCAAGTCCATTGGAAACTTATCATTAGAACATTTTCAGGCAATCTCTTGTGGAATTAATGGATATATTCCACTAGAAATCGGAAACATGAGTAACCTGATTGAATTAACTCTGAGTGGGAATGATTTAAATGGATCAATCCCTAGTACAATTAAAAGGTCAAATCAACTTCAACATTTGGATCTTAGCTACAATGAACTGCAAGGATCTATAGTTCATGAGCTTTGTGAAGTTAGTAGTTTGAGTGAGTTGTATTTAACAAGCAATACGCTCTTTGGTGTGCTACCAACATGCTTGGGAAACATGACTTCTCTTAGAAAGTTTCACATAGGATCTAATAAGTTGACTTCAATGATACCTTTGTCTTTTTGGAATCTTGAAGATATTTTAGAGGTAAACTTATCATCTAACGCTTTAATTGGAAATCTTCCACCTGAGATTAAGAATTTAAGAGCTCTTATACTATTAGATCTctctaaaaatcaattttcaagcACCATTCCAACGGCCATAAGTTTATTGAGAACTTTAGAAACTCTCTCCTTAGAAAATAACAAATTGAATGGTCCTATTCCAACATCACTTGGTGAAATGTTTAGTTTGAGTTTCTTGGACCTGTCTCAAAATCTTATAAGTGGTGTGATTCCAAAATCATTAGAGTTACTTCTTTCTCTTAAATACATAAATCTATCATACAATAGATTGCAAGGAGAGATTCCTGATGGAGGACCTTTCAAAAGATTCACAGCTCAATCTTTCATCCATAATGACGCGCTTTGTGGCAGTCCTCGCTTACAAGTACCTCCATGTGATAAACAAATTAGgaaaaaatcaaagacaaagGTAATATTGATCATTTCCATATCATCCATAATTGTTGTGTTGGGCATTTTGGTTGTTATATGCATAATGCATGGGAAACTTAAAAGGAAAAAGGTTGAAAATCCACTTAAAAGTGATTTGTCTGCTACTTTAGGGATTCCAAGAAGAATATCCTACTATGAACTTGTGAAAGCAACTAATGGATTTAGTGAAAATAATTTACTTGGAAAGGGTGGCTTTGGATCTGTGTATCAAGGAATTCTTTCTAGTGGAAAGATGGTGGCAATTAAAGTACTTGACTTGACATTGGAAGCAACATCAAGAAGCTTCGATGCGGAATGTAATGCAATGCGCAATCTTCGGCATCGAAATCTTGTGCAGGTTATCAGTAGTTGTTCAAATGATGATTTCAAATCTCTGGTGATGGAGTTTATGTCAAATGGAAGTGTGGAAAAATGGTTATACTCAAAGAACTATTGTTTGAATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATCTGCATTAGAGTATCTACATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTTTTACTAAATGAAGATATGGTTGCACATGTTAGTGATTTTGGCATTTCCAAGATCTTGGATGAAGGACAGTCTAAAACTCATACCAAGACTTTAGCTACTCTTGGTTATGTTGCACCAGAGTATGGATCTAAAGGAGTCATTTCAGTTAAAGGAGATGTGTACAGTTATGGGATAATGCTAATGGAAATGTTCACAGGAAAGAAGCCAACAAATGAAATGTTTTCAGAAGAATTAACCTTGAAAACTTGGATTAGTGAATCAATGGTCAATTCAGTTATGGAAGTTGTGGATTACAATTTAGTCTCACAACATGAGAAAGAACTTCATGAAATTTTAGCTTTAGCTTTGAGTTGCTGTGCAGATTCACCTGAGGCAAGAATTAAAATGACAGATGTAACTGCATCGTTAATCAAAATCAAGACCTTAGTCATGCGGTGA 3228 0.3401 MLSNWSISSSFSSCNWVGVTCDEHHGRVRALNLGNMSLKGTISPQLGNLSFLVVLDLHGNYFHGELPHELVHLKRLKLLNLNNNDFVGEIPSRIGYLSKLQYLHLGYNNIAGFIPQSISNLTMLEYLNLNSNLIKGTIPNVIGQLRRLRILHISNIKLLSGIIPNTVSNMSSVEEIYLTNNSLSGEIPKEIGDLVRLRIVNLQYNMLKGNIRMFNNTSLQYLYLGYNNLSGILPSNICQGLPNIRSLYLYANDFYGEMPKVWRYCKELEDLELSEINFDKGRMPPDIGKLNKLQYLFLPSTNLQGSIPMEIGHLNQLTNLQLSNNSLSGPIPSKILNISTLEVLALQENYLSGMLPSDMGFGLPNLQYLYLSRNNFVGKIPESISNASNLVRLQLDENEFSGIIPNSFGDLRLIEFLVIGSNNLTLNDDSLEINFLTSLTSCRYLAYLDVSENRLSKLPKSIGNLSLEHFQAISCGINGYIPLEIGNMSNLIELTLSGNDLNGSIPSTIKRSNQLQHLDLSYNELQGSIVHELCEVSSLSELYLTSNTLFGVLPTCLGNMTSLRKFHIGSNKLTSMIPLSFWNLEDILEVNLSSNALIGNLPPEIKNLRALILLDLSKNQFSSTIPTAISLLRTLETLSLENNKLNGPIPTSLGEMFSLSFLDLSQNLISGVIPKSLELLLSLKYINLSYNRLQGEIPDGGPFKRFTAQSFIHNDALCGSPRLQVPPCDKQIRKKSKTKVILIISISSIIVVLGILVVICIMHGKLKRKKVENPLKSDLSATLGIPRRISYYELVKATNGFSENNLLGKGGFGSVYQGILSSGKMVAIKVLDLTLEATSRSFDAECNAMRNLRHRNLVQVISSCSNDDFKSLVMEFMSNGSVEKWLYSKNYCLNFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLNEDMVAHVSDFGISKILDEGQSKTHTKTLATLGYVAPEYGSKGVISVKGDVYSYGIMLMEMFTGKKPTNEMFSEELTLKTWISESMVNSVMEVVDYNLVSQHEKELHEILALALSCCADSPEARIKMTDVTASLIKIKTLVMR 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03900 1075 SMART LRR_sd22_2 97 123 - -
Tsu08g03900 1075 SMART LRR_sd22_2 314 340 - -
Tsu08g03900 1075 SMART LRR_sd22_2 216 243 - -
Tsu08g03900 1075 SMART LRR_sd22_2 363 389 - -
Tsu08g03900 1075 SMART LRR_sd22_2 560 581 - -
Tsu08g03900 1075 SMART LRR_sd22_2 512 538 - -
Tsu08g03900 1075 Gene3D Transferase(Phosphotransferase) domain 1 877 1073 - -
Tsu08g03900 1075 SUPERFAMILY L domain-like 7 238 - -
Tsu08g03900 1075 SUPERFAMILY Protein kinase-like (PK-like) 782 1066 IPR011009 -
Tsu08g03900 1075 Pfam Leucine rich repeat 316 376 IPR001611 GO:0005515
Tsu08g03900 1075 Pfam Leucine rich repeat 538 597 IPR001611 GO:0005515
Tsu08g03900 1075 Pfam Leucine rich repeat 96 134 IPR001611 GO:0005515
Tsu08g03900 1075 Pfam Leucine rich repeat 146 207 IPR001611 GO:0005515
Tsu08g03900 1075 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 3 97 - -
Tsu08g03900 1075 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 264 1071 - -
Tsu08g03900 1075 Pfam Protein kinase domain 802 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03900 1075 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 97 185 - -
Tsu08g03900 1075 SMART serkin_6 801 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03900 1075 SUPERFAMILY RNI-like 363 698 - -
Tsu08g03900 1075 Gene3D Phosphorylase Kinase; domain 1 784 876 - -
Tsu08g03900 1075 SMART LRR_typ_2 680 704 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 560 583 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 97 120 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 436 465 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 608 632 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 656 679 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 488 512 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 121 145 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 388 410 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 217 240 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 170 194 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 363 387 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 536 559 IPR003591 -
Tsu08g03900 1075 SMART LRR_typ_2 49 73 IPR003591 -
Tsu08g03900 1075 SUPERFAMILY L domain-like 214 358 - -
Tsu08g03900 1075 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Tsu08g03900 1075 ProSitePatterns Protein kinases ATP-binding region signature. 807 829 IPR017441 GO:0005524
Tsu08g03900 1075 Gene3D Ribonuclease Inhibitor 1 157 IPR032675 -
Tsu08g03900 1075 Gene3D Ribonuclease Inhibitor 158 429 IPR032675 -
Tsu08g03900 1075 Gene3D Ribonuclease Inhibitor 430 737 IPR032675 -
Tsu08g03900 1075 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 264 1071 - -
Tsu08g03900 1075 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 159 278 - -
Tsu08g03900 1075 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 97 185 - -
Tsu08g03900 1075 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 159 278 - -
Tsu08g03900 1075 ProSiteProfiles Protein kinase domain profile. 801 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03900 1075 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03900 Tsu-Chr8 57329052 57338943 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03900 464 717 Receptor kinase-like Gene Family AT3G47570 31.250 3.62e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu08g03900 Pkinase 5.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03900 - K13420 mtr:MTR_8g465340 1176.39