LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g03894	ATGAAGAGTTGTGAAGAATGGAAACCTTTTATGATAATGATAGCAATTgatatttcttttgctgttgTGAATATTCTTCTCAAGAAAGTCCTTGATGAAGGAATGAACCATTTGGTTTTTATCACTTACCGTCTTTCGATTGCTACCATTTTCGTCGGCTCAATCGGTTACTTTAGAGAAAGaAATAGTAGACCGCCGCTCACATTTCGAATTTTATGTTACCTCTTCTTCAGTGCCATTGTTGGAGCATCAGTTACACAATATTTCTTCCTCCTAGGGATTCAATATACTTCTGCTACATTTGCTTGTGCCTTTGTCAACATGGTTCCTGTGATCACTTTCCTATTAGCATTGCCATTTGGATTAGAGACAGTGAACATCAAATGCAACAGTGGAAGAGCAAAGATTCTTGGTACATTGGTGTGTATAGTTGGTGCATTGATGTTAACACTTTACAAAGGAAAGGGTCTGTTTACTTTTTCTCACCATCAATCTTCAGTGAAGTTAACATCTACTAGGACACCAGAAAAATGGACTATTGGTGTAACAGCTTTGATTTTGGGAACTCTTTTTTGGTCTTCTTGGTTCATTTTACAATCTAAAATAAGCAAAAGATATCCATGTCAGTATTCTAGTACAGCAATTATGAGCTTCTTTGGTGCCATTCAATCAGCTGTTATTTGCTTCTTCATTGACCATAACTTGTCTATATGGGTTCTCAGAGGAAAGATTCAAATAATTGCAATTTTGTATGCTGGAATAATTGGATCAGGATTGTGTTTTGTTGGTATGTCATGGTGTGTGAAGAAAAGGGGTCCAGTCTTTACTGCAGCATTTAGCCCTTTTGTTCAAATAATGGCTGCCATGATTGATATCCCTGTCTTGCATGAACAGCTCTATCTTGGAAATGTGTTGGGATCCATCTTGGTGATGATTGGATTATACATTCTTCTATGGGGTAAGAACAAAGAGATGAAGAATCGTTTGATAAAGTTAGGGGAGGAAGCTGAAAAAAACAAGGAACAAGAGCCACAACCTCAAATACAACACTTAACTGTGTCTTGTGAATCAAGGTGTCAATAA	1083	0.3647	MKSCEEWKPFMIMIAIDISFAVVNILLKKVLDEGMNHLVFITYRLSIATIFVGSIGYFRERNSRPPLTFRILCYLFFSAIVGASVTQYFFLLGIQYTSATFACAFVNMVPVITFLLALPFGLETVNIKCNSGRAKILGTLVCIVGALMLTLYKGKGLFTFSHHQSSVKLTSTRTPEKWTIGVTALILGTLFWSSWFILQSKISKRYPCQYSSTAIMSFFGAIQSAVICFFIDHNLSIWVLRGKIQIIAILYAGIIGSGLCFVGMSWCVKKRGPVFTAAFSPFVQIMAAMIDIPVLHEQLYLGNVLGSILVMIGLYILLWGKNKEMKNRLIKLGEEAEKNKEQEPQPQIQHLTVSCESRCQ	360

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g03894	360	PANTHER	WAT1-RELATED PROTEIN	9	339	IPR030184	GO:0016021\|GO:0022857
	Tsu08g03894	360	Pfam	EamA-like transporter family	180	318	IPR000620	GO:0016020\|GO:0016021
	Tsu08g03894	360	Pfam	EamA-like transporter family	11	150	IPR000620	GO:0016020\|GO:0016021
	Tsu08g03894	360	PANTHER	WAT1-RELATED PROTEIN	9	339	-	-
	Tsu08g03894	360	Coils	Coil	322	342	-	-
	Tsu08g03894	360	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	43	154	-	-
	Tsu08g03894	360	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	242	323	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g03894	Tsu-Chr8	57282607	57286190	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g03894	7	252	Nodulin-like Gene Family	AT3G30340	51.984	1.54e-90	271

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g03894	-		-	gmx:100803670	599.356

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