Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03893 ATGGTAACACCAGTAACTGATAACGGATTCCGTAGCAGAAAGAAGTCATCAAGAGGTCACCATAGGTTTGTAGGAGTTCGTCAAAGGCCGTCAGGAAGATGGGTTGCAGAGATCAAAGACTCATTACAGAAAGTAAGGCTTTGGCTTGGAACATTCGACACAGCTGAAGAAGCCGCTCGTGCTTATGACACTGCTGCTAGAGCTTTGAGAGGTGCTAATGCTAGAACCAACTTTGATTTGCCAGAATCCGGAACCAATGGTGGTGGTGGCGCTAAGCGTGGTTCTGGTTCCAACTACATGTTAGAGAATACTGAGCCTTTTTCTTTTGAAGATGTTAGTGACTCGGGTTCAGGTTCCGAACACGGCCTTCTTGGTGCACTTAAGGCAAAACtttttgaaggaaaagaagggaaattttcattttcatttcctTCTGTTAGCACGGTTTCAAAATCAACGCAGAATTgttcgcaaaagaaaaaatcatcggCTACTTATTGCCTCTCTCAAATGAATCAAACTCATGTCAATACTATACCTAGTTCTTCATTGAATACTTCATCAAACACTTTTGCTAAAAGTATTGTTATTCCAAATCATGATCATGAAATTTGTCAAACACCATCTTTGACAAACATGTTATGGTCTAATGAAATGGAATTTGAATTACCTTGGCCTAATCAAAGTCATGTTCATGATGACAATAGTACTAATCTTTTTGCTACTGCAAGTGCATCAAATTTTTCATGGCCATTAATAGAGTCTAATGTTAACATGACATGTATAGATCAAGGGCTATTAACTAGTAACAGAAATGATCAAATAAATATGATGAGTATGCAATTACCTCAAGTTGATGGAGCAAGTGAAGGATTTTGGACAATGGATCAGCAGCAACAATTTGTGCAATGTGAAGAGAATAATAATTGGTTTGGTTCTGCTGGATCTTGGGATCCTCTTATCTATGTGCCCTCTGAGTTAGCTTGA 987 0.3678 MVTPVTDNGFRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFDLPESGTNGGGGAKRGSGSNYMLENTEPFSFEDVSDSGSGSEHGLLGALKAKLFEGKEGKFSFSFPSVSTVSKSTQNCSQKKKSSATYCLSQMNQTHVNTIPSSSLNTSSNTFAKSIVIPNHDHEICQTPSLTNMLWSNEMEFELPWPNQSHVHDDNSTNLFATASASNFSWPLIESNVNMTCIDQGLLTSNRNDQINMMSMQLPQVDGASEGFWTMDQQQQFVQCEENNNWFGSAGSWDPLIYVPSELA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03893 328 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Tsu08g03893 328 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Tsu08g03893 328 MobiDBLite consensus disorder prediction 1 25 - -
Tsu08g03893 328 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Tsu08g03893 328 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 323 - -
Tsu08g03893 328 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Tsu08g03893 328 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Tsu08g03893 328 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 5 323 - -
Tsu08g03893 328 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Tsu08g03893 328 MobiDBLite consensus disorder prediction 76 99 - -
Tsu08g03893 328 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Tsu08g03893 328 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03893 Tsu-Chr8 57277388 57278374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03893 11 78 AP2-EREBP Transcription Factor Family AT5G19790 69.118 1.72e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu08g03893 AP2 9.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03893 - - mtr:MTR_2g016730 505.753