Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03889 ATGGAAAGATCATCACTCTCTTCATCAGCTAAAAGGCGTGGTATAAAGAAAAGAGTAGTAGAAATTCCAATGAAGGATGTGGAAGGAACTAATACTCCACCGTCCGATTCATGGGCATGGAGAAAATACGGTCAAAAACCCATCAAAGGTTCCCCTTATCCAAGAGGATACTATAGATGTAGCAGTTCAAAGAGTTGTCCAGCAAGAAAACAAGTAGAAAGGAACCATGTGGACCCCACAGTGCTTCTTGTAACATACAGCTCCGATCATAACCACGCCGTGCCGGCACCTAGAAATTACCGCAACACAAGTAACGCCGCCGCATCAAACAAAGACTCCGAATCAGAACAAGAACCAGAAACAGAACCGGAGGAAAGGTTTACAGATCTTGGTGAGGAGCCGTTGATCTCTCCTACGGATGAATTAGGCGGATGGTTAGGAGAGGTGGATGCGATCGCGTCACCGGCGGGTTTGGAATGTCCGATTTTCTCGGAGCAGGAAGTTTCGATGTTGGGAGAAGAAGAGATGTCGTTGTTTGCAGATCTCGGAGAGTTGCCGGAGTGTTCGCCGGTGTTTTGGAGAGGGAGGAGGAGGAGTAACGGCAGCGCCGGCGATGTTAGTGTGGGACCACTTGTTGAAGCAAATTGCTCCTTGTGA 657 0.4825 MERSSLSSSAKRRGIKKRVVEIPMKDVEGTNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKSCPARKQVERNHVDPTVLLVTYSSDHNHAVPAPRNYRNTSNAAASNKDSESEQEPETEPEERFTDLGEEPLISPTDELGGWLGEVDAIASPAGLECPIFSEQEVSMLGEEEMSLFADLGELPECSPVFWRGRRRSNGSAGDVSVGPLVEANCSL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03889 218 MobiDBLite consensus disorder prediction 1 24 - -
Tsu08g03889 218 SMART WRKY_cls 34 94 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g03889 218 ProSiteProfiles WRKY domain profile. 35 95 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g03889 218 MobiDBLite consensus disorder prediction 88 142 - -
Tsu08g03889 218 SUPERFAMILY WRKY DNA-binding domain 31 95 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu08g03889 218 Pfam WRKY DNA -binding domain 36 92 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g03889 218 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 200 IPR044810 GO:0003700
Tsu08g03889 218 Gene3D WRKY domain 22 96 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu08g03889 218 MobiDBLite consensus disorder prediction 97 112 - -
Tsu08g03889 218 MobiDBLite consensus disorder prediction 1 55 - -
Tsu08g03889 218 PANTHER OS01G0750100 PROTEIN 4 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03889 Tsu-Chr8 57256844 57258664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03889 4 208 WRKY Transcription Factor Family AT1G29280 46.903 3.64e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu08g03889 WRKY 2.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03889 - - jre:109010041 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03889 08 57256844 57258664 Tsu08g03889 08 57256844 57258664 ECH