Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03886 ATGACTAGGGCTATTCGGAATAGGGTACTCAAAGATGCAAATGGTGATATTAGTGACCATCTACGCAACCATATCCATTTAACAAATTGTATTCACTTGAAGAATCATATGCATAAAAACAGTCCAATACTTGCTGATAGGTCTATTATGAGAGACCTTGTTGTGTTGCAAAGATCTCGTTCACTTCGGGATCCTTCTGCAAGTCCTCCATCATGGCACTCTCCTTCTGTAGTTGACTTGCTTTTCAAAAGATCTGAAAATGATGCCGTGATTCAAGGGGGTAGAAGGTCTGTTGGTAATGACAGTAAGAAGGGAGGTAGGAGATTGTCTGGAATTGGAAACTCGCCACCATTGGGGAGTAAAGGTACATCGAGAGTTGCTCCTGGTGAGGCGGCTAGTAGGGGTTTTGATGTGGTACCGGCGGCAACTAGTGAACGAAGTAGCAGGAGCGGAATGGGGGATGGGAGGAGAGTTGGGAGAGAAGAATCTGGCAGGAAGAGTAATAGGCCTGACTATTTAGAAGTTATTAGTCAAGAGAAGTTTCTTCATGAGGCTGGTAAAAGTTTGGCCGAAGATGTTGTTTCGAGGCATTCTCAATCGATAGATAGAAAGAGTAGACAGAGGGGGAAGAATGTTCGAGATGTTCCGGTTAAGACTCTTTCTGAACAGCTGAATGATGTTCCTTTGGATAGTGATGATTTAGCATCATCTAACATTCATTTTCGGGCAAGGTTTCCAAGACAGGAGAAAATTATTGAGGAGGCACAACAAGCTAGCATGCGCGGTCATGGTAATGGATTGAATAGGGTAAAAAGGCGTAAATTTCGAAGTGTAAGAAGAGCTCGGGTGGCTACAACGTCAAGAGATATTGGAGCTGAGAATGAATTGTCAGTGGCTTCCAACTCATTAGCTCAGGGTTCGGCTCACGAGAAATATCACTCAGAGGAGGTTGATGATTATGCAGATGGTAATGTTACTAGGGCTCCAAAAAACGGGTGTGGCATGCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCCTTGACATTGCTGGGAGAAGTTTATCTTGTGGTTTATCTGACTCGAGGTTAAAGAAAGGGACATCATTGACTTCCAATGGAAGAAATGTTTCTGCGATGCCTTTGGCAGCTGACTGTTCTAGCTCATGTACTAACTCTGAGGCAGAGGCACTGCCTTTACTAGTTGATGCATCTGGATCTCATGGAAGCTCCGATAATGCTTGCTGGGGCCGTGATTATGCGGGCGAACTAGGTATTTATGGTGATAATTTATTCAAGCAAGATACTGATTCGGATCTTGCTTCTGAAGCTAGATCTGGTGGCCAACATAACTTGAGACGGAATCATCATAGTAGACACCAAagtttaacacaaaaatatatgccaCGGACCTTCAGAGATATGGTTGGACAGAATTTAGTGGCGCAAGCGCTTTCAAATGCAGTGACAAGACGGAAAGTTGGATTGCTGTATGTGTTTTATGGTCCCCATGGCACCGGAAAAACATCCTGTGCTCGCATATTTGCCAGAGCTTTGAATTGTAGTTCGTCGGAGCACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGAAAGAGTAGAAGTATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAACATCATGGATCTACTCGATAATATGATTATTTCCCAGCTTCCGTCACAGTACAGAGTGTTTATTTTTGATGATTGTGATACGCTGTCAGTAGATTGTTGGAACGCTATATCCAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTACTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGTTAAAGGATTCAGATATCGCATACACACTGGAGCGGATTGCAACCAAAGAAGGGCTAGATATTGATAAGGATGCCCTGAAACTCATTGCATCAAGGTCTGACGGATCATTGAGAGATGCCGAGATGACACTTGAACAACTTAGTTTGCTTGGGCAGACAATTTCTGTTCCTCTTGTTCAAGAGCTGGTAGGGCTTATCTCTGACGAGAAGTTAGTGGATTTACTTGACTTGGCATTATCTGCGGACACGGTAAATACTGTGAAGAATTTGAGAGTGATAATGGAAGCAGGTGTTGAACCATTAGCTTTGATGTCACAGCTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACTAAAGACAGACGTAGAAGGAAATTCTTCCGAAGACAACCATTGTTCAAAGAAGACATGGAAAAGCTTCGCCAGGCTTTGAAAACTTTATCTGAGGCGGAGAAGCAGTTAAGGATGTCTAATGACAAGCTAACATGGTTAACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATGGGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTCGCTCTAAATAATGGAAATGTAAAAGAAGCTACTAGAAACACCGGTAATCCTGTTGAAATTCATAACAGAACAAGGAGAATGTCAATGGATGCTCGAATGGAAAATTCCCATGGTGGAAGCTCAGCAGATAGAAGGCACAGTGTGTCTGGTTTTCCTCCTCAACATACTTGTTCACATTCCACCGATAGGACTAGGATAAATGAAAGGCAGACTTTGGATAGAAACcgcaaagaaattgaagagatATGGTTAGAGGTGCTAGAGAGGATTCACTATCCTGGTCTCAAAGAGTTTTTGTATAAAGCAGGAAAACTAATCTTCATAAGTTTTGGCGCAGCTCCAACTGTGCAGCTAATGTTTGACTCTCAACTTTCCAAATCTACTGCTGAGAAGTTCACTGCTCACATCTTACAAGCATTTGAGTCTGTCCTTGGATCTTCTGTAACCATAGAAATAAGATGCGAGTCAAATAAAGATGGAGGCTCTCCTATTCAACTGCCACTTGTATTGCCTTCTGTCAATGATGGTTCATCTCATATCAGAGACTTAAATGACGTTGGTACTGAAAAGAGAAGGGGTGAAAttgtagaagaagaagaggcTTCTCATATGGAGCATAAGCATAATGAGCAGCACGTTGATGCTCACGCAACATATAGAAGTCTAGAAGGTACAAGTACGGGACAAGTGTCAGCTTCCCAAAAAATACCGATTGTTAAATCACATTCAGACCGAAGAAAGCTTAGTGAGCTAAGTCAAAGTCGAAGTCTTGTAAAAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCAACGAAGTGGGTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTAGAGCCAAGATCAAGGAGCTTACTATGCTGGAAATCATCTAGAGCGACTCGTCGGAAGCTGTCGCACTTGAAAATCCGAAACCGAAAAACACGTGCATTGCTGAACCTTGTCTCGTGCGGGAAATGTCTCTCCACAAAATCTCCGAGGTAG 3537 0.4176 MTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRSENDAVIQGGRRSVGNDSKKGGRRLSGIGNSPPLGSKGTSRVAPGEAASRGFDVVPAATSERSSRSGMGDGRRVGREESGRKSNRPDYLEVISQEKFLHEAGKSLAEDVVSRHSQSIDRKSRQRGKNVRDVPVKTLSEQLNDVPLDSDDLASSNIHFRARFPRQEKIIEEAQQASMRGHGNGLNRVKRRKFRSVRRARVATTSRDIGAENELSVASNSLAQGSAHEKYHSEEVDDYADGNVTRAPKNGCGMPWNWSRIHHRGKTFLDIAGRSLSCGLSDSRLKKGTSLTSNGRNVSAMPLAADCSSSCTNSEAEALPLLVDASGSHGSSDNACWGRDYAGELGIYGDNLFKQDTDSDLASEARSGGQHNLRRNHHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVTRRKVGLLYVFYGPHGTGKTSCARIFARALNCSSSEHPKPCGFCNYCIAHDMGKSRSIREVGPVSNFDFENIMDLLDNMIISQLPSQYRVFIFDDCDTLSVDCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIAYTLERIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQTISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKDRRRRKFFRRQPLFKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTSSDNSFNHSPFALNNGNVKEATRNTGNPVEIHNRTRRMSMDARMENSHGGSSADRRHSVSGFPPQHTCSHSTDRTRINERQTLDRNRKEIEEIWLEVLERIHYPGLKEFLYKAGKLIFISFGAAPTVQLMFDSQLSKSTAEKFTAHILQAFESVLGSSVTIEIRCESNKDGGSPIQLPLVLPSVNDGSSHIRDLNDVGTEKRRGEIVEEEEASHMEHKHNEQHVDAHATYRSLEGTSTGQVSASQKIPIVKSHSDRRKLSELSQSRSLVKSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKSSRATRRKLSHLKIRNRKTRALLNLVSCGKCLSTKSPR 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03886 1178 MobiDBLite consensus disorder prediction 444 466 - -
Tsu08g03886 1178 Pfam DNA polymerase III, delta subunit 480 637 - -
Tsu08g03886 1178 SUPERFAMILY post-AAA+ oligomerization domain-like 708 811 IPR008921 GO:0003677|GO:0006260
Tsu08g03886 1178 SMART AAA_5 496 637 IPR003593 -
Tsu08g03886 1178 Gene3D - 454 634 IPR027417 -
Tsu08g03886 1178 CDD HLD_clamp_pol_III_gamma_tau 637 700 IPR045085 -
Tsu08g03886 1178 PANTHER PROTEIN STICHEL-LIKE 3 195 1145 - -
Tsu08g03886 1178 Gene3D - 638 700 - -
Tsu08g03886 1178 MobiDBLite consensus disorder prediction 193 213 - -
Tsu08g03886 1178 MobiDBLite consensus disorder prediction 91 171 - -
Tsu08g03886 1178 MobiDBLite consensus disorder prediction 150 171 - -
Tsu08g03886 1178 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 463 811 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Tsu08g03886 1178 MobiDBLite consensus disorder prediction 864 894 - -
Tsu08g03886 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 685 IPR027417 -
Tsu08g03886 1178 CDD AAA 478 637 - -
Tsu08g03886 1178 Pfam DNA polymerase III subunits gamma and tau domain III 693 752 IPR022754 GO:0003887
Tsu08g03886 1178 Coils Coil 773 800 - -
Tsu08g03886 1178 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 195 1145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03886 Tsu-Chr8 57214694 57220498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03886 463 761 Core DNA Replication Machinery Family AT1G21690 24.252 4.94e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03886 - - gmx:100809005 1829.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03886 08 57214694 57220498 Tsu08g03886 08 57214694 57220498 ECH