Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03883 ATGGCTTCAGGGGCAATTTTCTCGTCGTTGCGGCGGCGAAGATCACCGACGTTAGAAGCTTTTCTTGCTCCGGTTGACTTAAGCGATGTTGCTTTGGTTCAGACTCTTGTAACGGTTGTGAACGAGCTTGTATCTTGTTTTTCAAAGcgttcttttttctttcagaggAAAAATACACGTTCTCTGGttagaaaaattgaagtttttcaAGTTCTTTTGGAGTATTTGAATGATTCGGGTTCGTGTTCGGGTTCTGGTTTTCCACCTACGGCTTTGCTTTGTTTGAAGGAGCTTTATTTGTTGCTGTATAGGTCAAAGATTCTTCTTGATTACTGCGCGCAATCGAGTAAGTTATGGCTTTTGCTTCAGAATCATTCGATTTCGGGTCATTTTCATGATTTGAATCAAGAgatttcgacacttttggatgtTTTTCCTGTTAAGGATGTTGGTTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTTTTATTGAAGCAATCAAGGAGGGCTAAGTTATTTATAGATATGGAAGATGATGCTATCAGGATTCGGTTCTTTTCGTTTCTTGATGAGTTTGAGAATGGGAGGATTCCTGATTCGGCCGAATTGCGATCTTTTTATGTTGATAAGTTGAAGGTTATTGATGCTGCTAGTTGTAGAACTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAACCATGAGGGTGATATTGAGCCTACAATTTCGGTACTTAAAGGGTTTGTAGCTATGACTCGGTATTGTAGGTTTTTGATTTTCGGATTTGAGGAAGATGAGCTTGATTTGGAAAATGGAAGTCAGAAGAAGAATCCCAAGAAGGGTCTGATAACTCAAGAAATTGCTGATACATTTTTAACTGTTCCAAAGGATTTTTGTTGTCCGATATCCTTGGATTTGATGAGAGACCCGGTGATTATTTCTACCGGTCAAACTTATGATAGGAGTTCCATTTCTAGGTGGATGGATGAAGGGCATACAACTTGTCCGAAAACAGGTCAAACGCTTGCTCACACTCGTCTTGTCCCAAATCGTGCCTTGAGGAATTTGATTGTGCAGTGGTGCAGTGCTCACGGAATCCCCCTTGATCCACCAGAAGTTATGGATGCAATGGGTGAAGCTTTTGCATCTGCTTGTCCCACCAAAGCCGCCCTCGAAGCCAATAGAGCCACTGCAAATCTTCTCATTCAACAGCTAGCTAATGGATCACAATCTGGAAAGACTATTGCTGCTCGGGAGATTCGATTGCTTGCCAAAACCGGAAGAGAAAATCGTGCCTTCCTTGCAGAAGCGGGGGCGATTCCTTATCTTCGGAACTTATTGGCGTCGCCTAGTTCTGTTGCTCAGGAGAATTCAGTTACTGCATTGCTCAACTTATCCATTTACGACAAGAATAAAAGCCGGATCATGGACGAGACAGGTTGTCTTGGATCAATTGTTGCTGTGTTGAGATTCGGGCATACAACAGAAGCAAGGGAAAACGCTGCTGCAACATTGTTCAGCCTATCAGCAGTCCATGACTATAAGAAGATAATCGCAGATGAGACCGGAGCCGTTGAAGCCTTGGCAGGGCTTTTGCAAGATGGGACTCCAAGAGGAAAGAAAGATGCGGTAACAGCTTTGTTCAATCTTTCCACACACACCGAGAATTGTGTTAGAATGATTGAGGCAGGAGCAGTAACAGCTCTAGTTGAGGCTTTGGGGAACGAAGGAGTTGCCGAGGAAGCAGCAGGTGCACTAGCCTTGATCGTTCGACAGCCTTTTGGAGCCAAAGCAGTAGTCAGTCAGGACGAAGCAGTCGCAGGATTGATAGGAATGATGCGTTGTGGAACACCACGTGGCAAGGAGAACGCAGTCGCAGCATTGCTTGAGTTATGCCGGAGTGGAGGTTCAGCTGCAACCGAAAGGGTGGTTAAGGCACCAGCTTTGGCCGGATTACTTCAAACCCTACTATTTACCGGCACAAAGCGAGCAAGACGAAAAGCCGCGTCACTTGCTAGAGTGTTTCAAAGATGTGAAAATGCATCTTTACATTATGGTGGATTAGGTGTAGGTTATGCATATGCTAGCAATTCAGCTCAAACTAGGGATTCAAGCTTTGTTTCGGGTGATGTTTCAGTACCGATGTCCATCTCTGTACCTGTATTATAG 2166 0.4307 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVSCFSKRSFFFQRKNTRSLVRKIEVFQVLLEYLNDSGSCSGSGFPPTALLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVGLSKDVREQVELLLKQSRRAKLFIDMEDDAIRIRFFSFLDEFENGRIPDSAELRSFYVDKLKVIDAASCRTEIEALEEQIVNHEGDIEPTISVLKGFVAMTRYCRFLIFGFEEDELDLENGSQKKNPKKGLITQEIADTFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRLVPNRALRNLIVQWCSAHGIPLDPPEVMDAMGEAFASACPTKAALEANRATANLLIQQLANGSQSGKTIAAREIRLLAKTGRENRAFLAEAGAIPYLRNLLASPSSVAQENSVTALLNLSIYDKNKSRIMDETGCLGSIVAVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQDGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVEALGNEGVAEEAAGALALIVRQPFGAKAVVSQDEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAYASNSAQTRDSSFVSGDVSVPMSISVPVL 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03883 721 SMART Ubox_2 296 359 IPR003613 GO:0004842|GO:0016567
Tsu08g03883 721 Pfam U-box domain 293 363 IPR003613 GO:0004842|GO:0016567
Tsu08g03883 721 SUPERFAMILY RING/U-box 281 366 - -
Tsu08g03883 721 Gene3D - 396 672 IPR011989 -
Tsu08g03883 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 366 IPR013083 -
Tsu08g03883 721 PANTHER U BOX DOMAIN-CONTAINING 12 702 - -
Tsu08g03883 721 ProSiteProfiles U-box domain profile. 292 366 IPR003613 GO:0004842|GO:0016567
Tsu08g03883 721 SUPERFAMILY ARM repeat 397 674 IPR016024 -
Tsu08g03883 721 SMART arm_5 591 632 IPR000225 GO:0005515
Tsu08g03883 721 SMART arm_5 511 551 IPR000225 GO:0005515
Tsu08g03883 721 SMART arm_5 426 466 IPR000225 GO:0005515
Tsu08g03883 721 SMART arm_5 552 590 IPR000225 GO:0005515
Tsu08g03883 721 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Tsu08g03883 721 Coils Coil 216 236 - -
Tsu08g03883 721 Pfam Armadillo/beta-catenin-like repeat 427 465 IPR000225 GO:0005515
Tsu08g03883 721 Gene3D - 27 148 IPR036537 GO:0007166
Tsu08g03883 721 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Tsu08g03883 721 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 702 - -
Tsu08g03883 721 CDD RING-Ubox_PUB 297 339 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03883 Tsu-Chr8 57197563 57200111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03883 1 721 U-box Gene Family AT1G29340 69.116 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03883 - - mtr:MTR_2g018010 1278.85