Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03878 ATGACCCGGTATTGTAGGTTTTTGATTTTCGGATTTGAGGAAGATGAGCTTGATTTGGAAAATGGAAGTCAGAAGAAGAATCCTAAGAAGGGTCTGATTACTCAAGAAATTGCTGATACATTTTTAACTGTTCCAAAGGATTTTTGTTGTCCGATATCATTGGATTTGACAAGAGACCCAGTGATTATGGAAGCTGGCGCGATTCCTAATGGATCACAATCTGGAAAGACTATAGCTGCTCAGGAGATTCGATTGCTTGCCAAAACCGGCAGAGAAAATCGTGCCTTCCTTGCAGAAGCGGGGGCGATTCCTTATCTTTGGAATTTATTGGCATCACCTAGTTCCGTTGCTCAGGAGAATTCAGTTACTGCGTTGCTCAACTTATCCATTTGCGACAAGAATAAAAGCCGGATCATGGACGAGACAGGTTGTCTTGGATCAATTGTCGCTGTGTTGAGATTTGGGCATACAACAGAAGCCAGGGAAAACGCTGCTGCAACATTGTTCAGCCTATCTGCAGTCCATGACTATAAGAAGATAATCGCGGATGAGACCGGAGCCGTTGAAGCCTTGGCAGGGCTTTTGCAAGATGGGActccaagaagaaagaaagatgcGGTAACAGCTTTGTTCAATCTTTCCACACACACCGAGAATTGTGTTAGAATGATTGAGGCAGGAGCAGTAACAACTCTAGTTGAGGCTTTGGGGAACGAAGGAGTTGCCGAGGAAGCAGCAGGTGCACTAGCCCTGATTGTTCGACATCCTTTTGGAGCCAAAGCGGTAGTCAGTCAGGACGAGGCAGTAGCAGGATTGATAGGAATGATGCGTTGTGGAACACCGCGGGGCAAAGAGAACGCAGTCGCAGCATTGCTTGAGTTATGCCGGAGTGGAGGTTCAGTTGCAACTGAAAGGGTGGTTAAGGCACCAGCTTTGGCCGGATTACTTCAAACCCTACTATTTACCGGCACAAAGCGAGCAAGACGAAAAGCCGCGTCACTTGCTAGAGTGTTTCAAAGATGTGAAAATGCATCTTTACATTATGGTGGATTAGGTGTAGGTTATGCATATGCTAGCAATTCAGCTCAAACTAGGGATTCAAGCTTTGTTTCGGGTGATGTTTCAATACCTATGTCGATCTCTGTACCTGTATTATAG 1158 0.4465 MTRYCRFLIFGFEEDELDLENGSQKKNPKKGLITQEIADTFLTVPKDFCCPISLDLTRDPVIMEAGAIPNGSQSGKTIAAQEIRLLAKTGRENRAFLAEAGAIPYLWNLLASPSSVAQENSVTALLNLSICDKNKSRIMDETGCLGSIVAVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQDGTPRRKKDAVTALFNLSTHTENCVRMIEAGAVTTLVEALGNEGVAEEAAGALALIVRHPFGAKAVVSQDEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSVATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAYASNSAQTRDSSFVSGDVSIPMSISVPVL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03878 385 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 186 228 IPR000225 GO:0005515
Tsu08g03878 385 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Tsu08g03878 385 SMART arm_5 175 215 IPR000225 GO:0005515
Tsu08g03878 385 SMART arm_5 216 254 IPR000225 GO:0005515
Tsu08g03878 385 SMART arm_5 255 296 IPR000225 GO:0005515
Tsu08g03878 385 SMART arm_5 90 130 IPR000225 GO:0005515
Tsu08g03878 385 Gene3D - 186 340 IPR011989 -
Tsu08g03878 385 SUPERFAMILY ARM repeat 75 338 IPR016024 -
Tsu08g03878 385 PANTHER U BOX DOMAIN-CONTAINING 70 367 - -
Tsu08g03878 385 PANTHER U BOX DOMAIN-CONTAINING 1 66 - -
Tsu08g03878 385 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 70 367 - -
Tsu08g03878 385 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 1 66 - -
Tsu08g03878 385 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Tsu08g03878 385 Gene3D - 67 185 IPR011989 -
Tsu08g03878 385 SUPERFAMILY RING/U-box 32 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03878 Tsu-Chr8 57143338 57144781 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03878 68 385 U-box Gene Family AT1G29340 69.375 3.04e-134 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03878 - - mtr:MTR_2g018010 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03878 08 57143338 57144781 Tsu08g03878 08 57143338 57144781 ECH