Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03877 atGATGAAATGGGGTGGaaaaaaatcttcttcttcttcgtcttcttctaGTGCTTTTTCTTGGCTTTCAAAGTTGAAACATATAAGAATCAATTCTGATTCAAATCATGAAAAAATTAAGCACAGGGAAAAACAAATTTCTCCACCTTCATGTTTTGATATTGGTGGTAAAAATGGTaacaaaaatggaagaaaaaaactaCAAAGTACACTCAAGTTGAAGGAGAAGGATATTATTGGTCTAGAAGATGAGAGAAAAATGGTGGATGATTATGATAGAGAAATGGAATATGAAAACATGAGAAGAAGATTTGAGAGAAAAGCACAACAAGTTTTGGAAGAACAACTCttgaaattagaaaaagaagcaaaagaagttgaagaaaaaaatgctATGTTTCAAGATGAATCACCAAGAACAATTTGTACACCAAGAACAACACATTCTTTTGGTTCTTCTAGACTAAGAAATGTTAGAGAAAATCATGTCGAGAAAAGCGAAATTGAACCGTCACAGAGGAAACAGAGTTATGGTGATGAGAAGCAGAGTTTGAAGATAAAgactcaagaaaaacaaaggagGAAAATAAAGAAAGTTTCAAGGGTGAAAATATATTCACCAAGAATGGTTTCAAAAGTTGAAATAAGTAGAATTAAAGCATTAGAAGAAATGaggaacaaagcaaaacaaaagaTGAAGAAAGAAATGAAGGACGAAATTATGGAAGAAATAATTAGTACTAATCCAGAATTAGATAGTTTTGCTGTGATAAAATGTTCATTAAATCCAAAGCAAGATTTTAGAGATTCAATGATTGAAATGATTGAAGATAAACAGATTAGTAAAGCAGAAGAAATGGAAGAGTTGTTGGCATGTTATTTGACTTTGAATGCTGATGAGTATCATGATCTCATAATCAAAGTGTTTAGACAGGTATGGTTTGATATGAGTCAATATGGTTTTGGTATTAATTCTGAAATGCAATTGGGTTGCTATGAATGA 1002 0.2725 MMKWGGKKSSSSSSSSSAFSWLSKLKHIRINSDSNHEKIKHREKQISPPSCFDIGGKNGNKNGRKKLQSTLKLKEKDIIGLEDERKMVDDYDREMEYENMRRRFERKAQQVLEEQLLKLEKEAKEVEEKNAMFQDESPRTICTPRTTHSFGSSRLRNVRENHVEKSEIEPSQRKQSYGDEKQSLKIKTQEKQRRKIKKVSRVKIYSPRMVSKVEISRIKALEEMRNKAKQKMKKEMKDEIMEEIISTNPELDSFAVIKCSLNPKQDFRDSMIEMIEDKQISKAEEMEELLACYLTLNADEYHDLIIKVFRQVWFDMSQYGFGINSEMQLGCYE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03877 333 ProSiteProfiles OVATE domain profile. 256 315 IPR006458 -
Tsu08g03877 333 PANTHER TRANSCRIPTION REPRESSOR OFP4 9 326 - -
Tsu08g03877 333 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 255 316 IPR006458 -
Tsu08g03877 333 Coils Coil 218 238 - -
Tsu08g03877 333 Coils Coil 64 84 - -
Tsu08g03877 333 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 9 326 IPR038933 GO:0045892
Tsu08g03877 333 MobiDBLite consensus disorder prediction 32 47 - -
Tsu08g03877 333 MobiDBLite consensus disorder prediction 32 64 - -
Tsu08g03877 333 Coils Coil 94 136 - -
Tsu08g03877 333 MobiDBLite consensus disorder prediction 155 189 - -
Tsu08g03877 333 Pfam Transcriptional repressor, ovate 260 316 IPR006458 -
Tsu08g03877 333 MobiDBLite consensus disorder prediction 129 192 - -
Tsu08g03877 333 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03877 Tsu-Chr8 57114186 57115187 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Tsu08g03877 Ovate 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03877 - - cam:101515364 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03877 08 57114186 57115187 Tsu08g03877 08 57114186 57115187 ECH
Tsu02g01013 02 8459925 8461022 Tsu08g03877 08 57114186 57115187 PCT