Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03876 ATGGAGAAAGGTAATGGAAGTTCAAGTTCAAATTCATCATTGTCTCCTTTTCTCTCTAAGACTTATGAGATGATTGATGATTCTTCCACTGATGCAATTATTTCATGGAGTGATACCAATAGAAGTTTCATTATTTGGAATCCACTAGTTTTTGGAAGTGATTTGTTACCTAAGTTCTTTAAGCATAATAACTTCTCAAGCTTCATCAGACAACTTAATACCTATGGCTTTCGAAAAGTTGATCCAAAACTATGGGAATATGCAAATGATGATTTTGTAAGAGATCGACCGCATCTTATGAAGAATATCCACAGGAGCAAACCAGTTCATAGCCATTCTTTGCAGAATTCCCGTGGCCAAGGGGCTGCTGCCACTCCACTAACAGAATCCGAACAGCGAAATTTGAATGTGGCGATTCAAAGACTTCAAGATGACAAAGAACAACTACTTCTTGAATTGCAGAGACATGACGAGGAGTGGAAAGTGAAACAATTACTGTTAGAATACGTGAAGGATCGTTTGGAAAAGTTGGAACAGAGGCAACAAACCATACTCTCTTCAGTTGGTCAAGTGCTGCAGAATCCTAGGGATGAGTCAGGTCTCTGGCCACTGACAGAAAACTCAAAGAGAAAACGAAAGTTTCCGAGAAATATTCCCTTTAGTAATGATGCTAGCATTGAAGATCGTATGGAAACTTCTTGTGTGTCACCTAGAGAAAATGCCGAGAGTGTATCTATTCTCTCGTTAAACATGAGAAGATTGGATCTGCTTGAGTCATCGTTGACGTTTTGGGAGAATATTGTACATGATGTTAGTGAAACTTCTTTTCAAAGTCACTCAAACACAGACTTTGATGACTCTACGAATTGTGCAAATAGTCCAGTAATATCTTGTGCGCGACTTGATTTTGACGTTCAGCCCAAGTCGCTGGGAATCGACACGAACTTTGATCCAGCTACTGTTGTTGTTCCTGATCCTGTTGCATTTGCAAATGAGTCAGATGCTGTTGTTGCTCCCGTTCCCGTTACATTTACACCTGATCCAGCTGTTGTCGCTATTCTCGATCCTGATGCATTTACACCTGAGCCAGTTGCTGTCGTTGTTCCTTGCCCTGATGAACTAAATGAACAACCTGTCGTAATAGCCCTGGTGACTACCGATCATAATGACGATTTTTGGGAACAATTCTTGACAGAAAATCCTCCTTCCGCTTCAGATGATGAGACAAAACAAATGGATTGA 1242 0.4042 MEKGNGSSSSNSSLSPFLSKTYEMIDDSSTDAIISWSDTNRSFIIWNPLVFGSDLLPKFFKHNNFSSFIRQLNTYGFRKVDPKLWEYANDDFVRDRPHLMKNIHRSKPVHSHSLQNSRGQGAAATPLTESEQRNLNVAIQRLQDDKEQLLLELQRHDEEWKVKQLLLEYVKDRLEKLEQRQQTILSSVGQVLQNPRDESGLWPLTENSKRKRKFPRNIPFSNDASIEDRMETSCVSPRENAESVSILSLNMRRLDLLESSLTFWENIVHDVSETSFQSHSNTDFDDSTNCANSPVISCARLDFDVQPKSLGIDTNFDPATVVVPDPVAFANESDAVVAPVPVTFTPDPAVVAILDPDAFTPEPVAVVVPCPDELNEQPVVIALVTTDHNDDFWEQFLTENPPSASDDETKQMD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03876 413 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu08g03876 413 Gene3D - 9 107 IPR036388 -
Tsu08g03876 413 MobiDBLite consensus disorder prediction 107 127 - -
Tsu08g03876 413 Pfam HSF-type DNA-binding 17 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu08g03876 413 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 7 410 - -
Tsu08g03876 413 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu08g03876 413 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu08g03876 413 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu08g03876 413 MobiDBLite consensus disorder prediction 109 127 - -
Tsu08g03876 413 Coils Coil 132 159 - -
Tsu08g03876 413 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Tsu08g03876 413 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu08g03876 413 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 410 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03876 Tsu-Chr8 57105599 57107406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03876 5 410 HSF AT4G18880 42.195 2.81e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu08g03876 HSF_DNA-bind 2.2e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03876 K09419 - gmx:100820566 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03876 08 57105599 57107406 Tsu08g03876 08 57105599 57107406 ECH
Tsu02g01012 02 8453634 8455953 Tsu08g03876 08 57105599 57107406 PCT