Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03868 ATGGCTGATCATTCATCAAGCAATGGCAACCATGATCACATAGTTTTGGATGTCAATGATGCCTCACAAAATTGTGAAGATTCATCTGGATTTAAAGATTGTGTCCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGAACATACTTCTTGATATTTGCAGGATGTGCTGCTGTTGTGGTGAACCTTAACAATGACAAAGTGGTATCACTTCCTGGAATTTCAATTGTTTGGGGTCTTGCTGTTATGGTATTAGTTTATTCTGTTGGTCATATTTCTGGTGCTCATTTCAATCCTGCTGTTACTATTGCTCATGCTTCAACCAAAAGGTTCCCCCTTAAGCAGGTACCAAGTTATATAATAGCTCAACTTCTTGGATCTACACTTGCAAGTGGAACACTTAGACTTTTATTCAATGGCAAGGAAAATCATTTTTCAGGAACACTCCCTGCTGGTTCTGATCTTCAAGCATTTGTGATTGAATTCATAATCACTTTTTATCTTATGTTCGTCGTTTCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGAGCTACTGTACTTCTAAACGTGATGTTTGCCGGGCCAATTACTGGAGCATCAATGAATCCTGCAAGAAGTTTAGGACCTGCTATTGTTCACCATGAGTATAGAGGAATATGGATATATTTAGTGTCACCAACTCTTGGTGCGGTGGCCGGTACATGGGCGTATACTTTTATCCGATACACAAACAAGCCGGTTCGTGAAATTAGTAAGAGTGCCTCTTTCCTTAAAGCAGTTGCAAATGGCGGAGCTAAGTGA 825 0.4085 MADHSSSNGNHDHIVLDVNDASQNCEDSSGFKDCVPLLQKLVAEVVGTYFLIFAGCAAVVVNLNNDKVVSLPGISIVWGLAVMVLVYSVGHISGAHFNPAVTIAHASTKRFPLKQVPSYIIAQLLGSTLASGTLRLLFNGKENHFSGTLPAGSDLQAFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVHHEYRGIWIYLVSPTLGAVAGTWAYTFIRYTNKPVREISKSASFLKAVANGGAK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03868 274 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Tsu08g03868 274 PANTHER AQUAPORIN NIP2-1 1 269 IPR034294 -
Tsu08g03868 274 Gene3D Glycerol uptake facilitator protein. 3 261 IPR023271 -
Tsu08g03868 274 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 269 - -
Tsu08g03868 274 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03868 274 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03868 274 SUPERFAMILY Aquaporin-like 36 258 IPR023271 -
Tsu08g03868 274 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03868 274 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03868 274 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03868 274 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03868 274 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03868 274 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03868 274 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03868 Tsu-Chr8 57003335 57006046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03868 24 270 Major Intrinsic Protein MIP AT5G37820 60.000 2.81e-105 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03868 K09874 - gmx:100812577 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01003 02 8375300 8378493 Tsu08g03868 08 57003335 57006046 PCT