Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03850 ATGGAAGCTAAAAATCCAACAAGATTCAAGCTAGGGAAACAATCATCATTAGCACCAGAACGACATAGGGAAGAAGATGGAGTTCAAcatgatggtgatgatgttgcTGCTACTATTGATCCTGGTGTTAGGTTGATGTATTCAGCTAATGAAGGTGATATTGATGGAATTCGTGAGGTTCTTGAATCAGGTGTGAGTGTTAATTTTAGAGATATTGATGGACGTACTGCTCTTCATATTGCTGCTTGTCAGGGGTTGACTCATGTTGTTGAGTTGTTGCTTGAGAAAGGGGCTGATGTTGATCCTAAAGATCGTTGGGGAAGCACGCCCCTTGCAGATGCTATATTCTATAAAAACAATGATGTGATCAAACTATTGGAGAATCATGGAGCAAAGCCTCTGATGGCCCCTATGCATGTTAATCATGCACGAGAAGTCCCGGAATATGAAATCAATCCTAAAGAACTTGATTTTACTAGCAGTGTGGAGATAACAAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGGACTGAGGTTGCAGTAAAAAAGCTCGGGGAGGATGTGATTAGTGATGAGGAGAAAGTGAATGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATTCGGCATCCAAATGTAGTCCAATTTCTTGGTGCTGTGACACAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGACttcatgaaaagaaaaggagcTTTGAAACCAAGTACAGCTGTGAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAACCATCACCCATTATTCACCGTGATCTTGAGCCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTAGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGACACTTCTTGCCGCTACGTGGCTCCTGAGGTTTTTAAACAAGAAGAATACGACACTAAAGTGGACGTGTTCTCATTTGCATTAATTCTACAAGAGATGATCGAAGGCTGCCCTCCTTTTTCGGCAAAGCGCGATGACGAGGTTCCTAAAGCATATGCTTCAAAAGAGAGGCCGCCCTTCCACGCTCCTGCCAAGCGTTATTCTCATGGAATCCGAGAGTTGATTGAAGAATGCTGGAATGAGAATCCAGCAAAGAGGCCAACATTCAGGCAAATAATAACAAGGTTGGAGTCCATCTACAATACAATTGGTCAAAAAGGACGTTGGAAGGTTAGACCATTGAGGTGCTTTCAGAATCTGGAAGCATTGATTAAGAGAGATCGTTCGAAATTAAGTAGTCGGGGCAGTTCATCTCGCTCAAGTACTAGCCATTTATGA 1383 0.415 MEAKNPTRFKLGKQSSLAPERHREEDGVQHDGDDVAATIDPGVRLMYSANEGDIDGIREVLESGVSVNFRDIDGRTALHIAACQGLTHVVELLLEKGADVDPKDRWGSTPLADAIFYKNNDVIKLLENHGAKPLMAPMHVNHAREVPEYEINPKELDFTSSVEITKGTFCSALWRGTEVAVKKLGEDVISDEEKVNAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDFMKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCQDTSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKRDDEVPKAYASKERPPFHAPAKRYSHGIRELIEECWNENPAKRPTFRQIITRLESIYNTIGQKGRWKVRPLRCFQNLEALIKRDRSKLSSRGSSSRSSTSHL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03850 460 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Tsu08g03850 460 MobiDBLite consensus disorder prediction 15 33 - -
Tsu08g03850 460 Pfam Ankyrin repeats (3 copies) 45 133 IPR002110 GO:0005515
Tsu08g03850 460 PIRSF ILK 1 434 - -
Tsu08g03850 460 ProSiteProfiles Protein kinase domain profile. 158 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03850 460 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 442 - -
Tsu08g03850 460 PRINTS Tyrosine kinase catalytic domain signature 382 404 IPR001245 GO:0004672|GO:0006468
Tsu08g03850 460 PRINTS Tyrosine kinase catalytic domain signature 230 243 IPR001245 GO:0004672|GO:0006468
Tsu08g03850 460 PRINTS Tyrosine kinase catalytic domain signature 269 287 IPR001245 GO:0004672|GO:0006468
Tsu08g03850 460 Pfam Protein tyrosine and serine/threonine kinase 175 411 IPR001245 GO:0004672|GO:0006468
Tsu08g03850 460 MobiDBLite consensus disorder prediction 1 33 - -
Tsu08g03850 460 Gene3D Phosphorylase Kinase; domain 1 150 233 - -
Tsu08g03850 460 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Tsu08g03850 460 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 442 - -
Tsu08g03850 460 SMART ANK_2a 40 69 IPR002110 GO:0005515
Tsu08g03850 460 SMART ANK_2a 106 135 IPR002110 GO:0005515
Tsu08g03850 460 SMART ANK_2a 73 102 IPR002110 GO:0005515
Tsu08g03850 460 CDD STKc_MAP3K-like 164 411 - -
Tsu08g03850 460 Gene3D - 8 149 IPR036770 -
Tsu08g03850 460 SUPERFAMILY Protein kinase-like (PK-like) 163 412 IPR011009 -
Tsu08g03850 460 SUPERFAMILY Ankyrin repeat 44 135 IPR036770 -
Tsu08g03850 460 Gene3D Transferase(Phosphotransferase) domain 1 234 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03850 Tsu-Chr8 56862327 56871249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03850 8 432 MAP Kinase Kinase Kinase AT4G18950 69.953 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Tsu08g03850 PK_Tyr_Ser-Thr 2.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03850 - - gmx:100790126 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03850 08 56862327 56871249 Tsu08g03850 08 56862327 56871249 ECH