Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03849 ATGAAATCGAGTTGCAGTGGGTGTCGTGTACTTCGCAAAGGTTGCAGTGAAAACTGCATCATCAAACCTTGCCTTGAGTGGATTCGTTGCCCTGAAGCTCAAGGCAATGTCACCCTCTTCCTTGCCAAGTTTTATGGCCGAACTGGTTTGCTCAACCTCCTTGCTAACGCTACCAATAAAAATTCCATAGCTGTATTCAAATCATTGTTGTACGAGGCTGCGGGTAGATTGGTGAATCCCACACATGGAGCACTCGGTTTATTTCAGACTGGAGAATGGAGCAAATGTGAAGCTGCAGTTGAAGCCGTGCTGACTGGATCAAATATTAACACTGTTACAGTTGCTGATCGACAAACATCATCATATACAAACATTGCTGAAAAGTGTGTTCTTTCAACAGCCAATGATATACGCCACCTAGCAAGAGGTACTAACATGGAGATCAAAGAGAAAACTCAATTCAAGAGAGTTGGGTCGACTTTCAAGCCCAAGTCGCAAGTTGGTTTTGTCGACAATACTACACTTTTGAAATCAATTTTGGAGAAAGAGCCAAATGGAGCTACTGAAACTCAAGTCAACTTGGAACTCACTCTGGGCATCAATTTCCAATCAAACAATGGCAAAAACTCAtatgataattaa 642 0.419 MKSSCSGCRVLRKGCSENCIIKPCLEWIRCPEAQGNVTLFLAKFYGRTGLLNLLANATNKNSIAVFKSLLYEAAGRLVNPTHGALGLFQTGEWSKCEAAVEAVLTGSNINTVTVADRQTSSYTNIAEKCVLSTANDIRHLARGTNMEIKEKTQFKRVGSTFKPKSQVGFVDNTTLLKSILEKEPNGATETQVNLELTLGINFQSNNGKNSYDN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03849 213 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Tsu08g03849 213 Pfam Lateral organ boundaries (LOB) domain 4 104 IPR004883 -
Tsu08g03849 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 210 - -
Tsu08g03849 213 PANTHER LOB DOMAIN PROTEIN 1 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03849 Tsu-Chr8 56846140 56847191 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03849 1 142 AS2 family AT1G68510 50.704 4.98e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu08g03849 LOB 9.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03849 - - mtr:MTR_1g110840 271.166