Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03848 ATGGCTTTTCCAAATCAATCCATGTCAGATTCTCCACAGAGAAAGATAGGAAGGGGAAAAATTGAGATCAAAAGGATTGAAAACACGACGAATCGTCAAGTAACTTTCTGCAAACGTAGAAATGGCTTACTGAAAAAAGCTTATGAATTATCTGTTCTTTGTGATGCAGAAGTTGCTCTAATAGTCTTCTCTAGCCGTGGACGCCTCTATGAATATGCTAATAACAGTGTGAAAGCAACTATTGATAGGTACAAAAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGACAAATTGCGTGTGCAAATCAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAATCTTTGGGTTCTATGAATGCAAAGGAACTGAAAAACCTTGAGTCTAAATTAGAAAAAGGAATAAGTAGGATTCGTTCTAAAAagAACGAGCTGTTATTTGCTGAAATTGAATACATGCAAAAGAGgGAGTTAGACTTGCACAATAACAACCAACTTCTGAGAGCAAAGATAGCTGAAAGTGAGagaaaccatcatcatcatcataatattaATATGAGTGTGTTACCTGGAGGAACAAACTATGAATCAATGCAGTCTCATCAGGCTCAGCAGCAGCAGCAATATGATTCTCGTGGATACTTTCAAGTGTCTGGATTACAACCAAGTAGTCAGTATGGAAGACAAGACCATATGTCCCTTCAATTAGTTTGA 759 0.3702 MAFPNQSMSDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGAGSASEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKELKNLESKLEKGISRIRSKKNELLFAEIEYMQKRELDLHNNNQLLRAKIAESERNHHHHHNINMSVLPGGTNYESMQSHQAQQQQQYDSRGYFQVSGLQPSSQYGRQDHMSLQLV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03848 252 MobiDBLite consensus disorder prediction 202 226 - -
Tsu08g03848 252 MobiDBLite consensus disorder prediction 1 20 - -
Tsu08g03848 252 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Tsu08g03848 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Tsu08g03848 252 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Tsu08g03848 252 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Tsu08g03848 252 Coils Coil 102 129 - -
Tsu08g03848 252 Coils Coil 139 159 - -
Tsu08g03848 252 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Tsu08g03848 252 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Tsu08g03848 252 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Tsu08g03848 252 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Tsu08g03848 252 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu08g03848 252 MobiDBLite consensus disorder prediction 189 226 - -
Tsu08g03848 252 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Tsu08g03848 252 PANTHER MADS BOX PROTEIN 10 246 - -
Tsu08g03848 252 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu08g03848 252 PANTHER AGAMOUSB 10 246 - -
Tsu08g03848 252 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03848 Tsu-Chr8 56820379 56828677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03848 14 252 MADS-box Gene Family AT3G58780 66.946 7.70e-109 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu08g03848 K-box 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03848 K09264 - gmx:732595 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03848 08 56820379 56828677 Tsu08g03848 08 56820379 56828677 ECH
Tsu02g00991 02 8281732 8287149 Tsu08g03848 08 56820379 56828677 PCT