Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03832 atggCTGTAGAAGACACCCCCAAATCCATCATCACCGACGATCAAATCCCACCAAACCCTAACAACGaagaaatcaacaacaacaacaacgatCTCGAAGAAGGTGAAATCCTCGATGAAGGAGACGATTCCTCCGCCACTTCCAAACCCAATTCCGCCGCTGTTCATCCTCTCGAGAATTCTTGGACCTTCTGGTTCGATAACCCTCAAGCTAAATCCAAACAAGCTGCTTGGGGTAGCTCTATTCGACCTATCTACACTTTCTCCACTGTTGAAGAATTTTGGAGCATTTACAATAACATTCATCATCCTAGCAAGTTGGCTGTTGGAGCTGATTTTCATTGTTTCAAGCATAAGATTGAACCTAAATGGGAGGATCCTATTTGTGCTAATGGTGGAAAATGGACTGTACAGTATCAGAAGGGGAAATCTGATACCAGTTGGTTATATACGTTGTTGGCAATGATTGGAGAACAATTTGATCATGGAGATGAAATTTGTGGAGCAGTTGTGAATGTCAGGAATAGGGCTGAGAAAATTTCTATTTGGACTAAGAATGCTGCAAATGAAGCTGCTCAGGTGAGCATTGGAAAACAGTGGAAGGAGTTTCTTGATTATAATGAAACCATTGGCTTTATATTTCATGATGATGCGAAGAAGCATGACAGAGCTACATATTATGGATTATTCTTACTAAAAAATTGCCAATTCAATCATCATGAGACCCATTTTACAAAGCTTGTGAAATGGAATGCTCTTGGGGACACTGGCATGATTTTGAATGTTGATGGCAGTAGTATTGGTAATCCTGTTATTTCTGGCTTCGGGGGGCTAATTCATAATGCATATGGAGCTTGGGGCCATGGCTTCTTTGGAAACCTCGGAGTCACTGATATTCTTCATGCGGAGCTTATGACAATTTATAAAGATCTCCTCTTAGCTTGGGAGTTGAACATTAAGAACATGTGGTGTTATTGCGACTCCGAGATGGCGATCAAACTCATCACCGAACCTATTGATGTGTGGCACCATTATGCAACCATCCTCGACAATATTAAGGACACCCTGAATAGAGACTGGCATGTCATAATCCTTCATACCTTCTAA 1107 0.4038 MAVEDTPKSIITDDQIPPNPNNEEINNNNNDLEEGEILDEGDDSSATSKPNSAAVHPLENSWTFWFDNPQAKSKQAAWGSSIRPIYTFSTVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPICANGGKWTVQYQKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRNRAEKISIWTKNAANEAAQVSIGKQWKEFLDYNETIGFIFHDDAKKHDRATYYGLFLLKNCQFNHHETHFTKLVKWNALGDTGMILNVDGSSIGNPVISGFGGLIHNAYGAWGHGFFGNLGVTDILHAELMTIYKDLLLAWELNIKNMWCYCDSEMAIKLITEPIDVWHHYATILDNIKDTLNRDWHVIILHTF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03832 368 Pfam Eukaryotic initiation factor 4E 57 209 IPR001040 GO:0003723|GO:0003743|GO:0006413
Tsu08g03832 368 Gene3D RNA Cap, Translation Initiation Factor Eif4e 48 227 IPR023398 -
Tsu08g03832 368 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 1 225 IPR001040 GO:0003723|GO:0003743|GO:0006413
Tsu08g03832 368 MobiDBLite consensus disorder prediction 12 28 - -
Tsu08g03832 368 ProSitePatterns Eukaryotic initiation factor 4E signature. 112 135 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Tsu08g03832 368 SUPERFAMILY eIF4e-like 33 224 IPR023398 -
Tsu08g03832 368 MobiDBLite consensus disorder prediction 1 53 - -
Tsu08g03832 368 Pfam Reverse transcriptase-like 261 366 IPR002156 GO:0003676|GO:0004523
Tsu08g03832 368 SUPERFAMILY Ribonuclease H-like 258 364 IPR012337 -
Tsu08g03832 368 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-1 1 225 - -
Tsu08g03832 368 CDD RNase_H_like 260 367 IPR044730 -
Tsu08g03832 368 Gene3D - 257 368 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03832 Tsu-Chr8 56630562 56633849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03832 1 223 Eukaryotic Initiation Factors Gene Family AT4G18040 67.826 3.26e-107 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03832 K03259 - gmx:100793288 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03832 08 56630562 56633849 Tsu08g03832 08 56630562 56633849 ECH