Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03827 ATGTTTACCCAAGGAGTGGATGCCGGCGCCGTCAAGCAAGGAGATTTCAGAATAGAATTGTGTGATTTCTGGTTGAAGTCGGTTCCTTGCCAACACGGTGTTGGTTGTAGGTTTGCACACGGTCCTGCGCAACTTCGCAAGATTACTCTCCGAGATGATCTTTGGAGAACAAAGCCTTGCAGAAATTTTGCGGCTGACAAGTGCTCATATGGGAATCGTTGTAGATTCCGCCACTAA 237 0.4768 MFTQGVDAGAVKQGDFRIELCDFWLKSVPCQHGVGCRFAHGPAQLRKITLRDDLWRTKPCRNFAADKCSYGNRCRFRH 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03827 78 Pfam CCCH-type zinc finger 58 78 IPR041367 -
Tsu08g03827 78 ProSiteProfiles Zinc finger C3H1-type profile. 15 43 IPR000571 GO:0046872
Tsu08g03827 78 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 18 42 IPR000571 GO:0046872
Tsu08g03827 78 PANTHER CCCH ZINC FINGER/TIS11-RELATED 6 78 IPR045877 GO:0003729
Tsu08g03827 78 SUPERFAMILY CCCH zinc finger 14 46 IPR036855 GO:0046872
Tsu08g03827 78 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 6 78 - -
Tsu08g03827 78 ProSiteProfiles Zinc finger C3H1-type profile. 54 78 IPR000571 GO:0046872
Tsu08g03827 78 Gene3D - 49 78 - -
Tsu08g03827 78 Gene3D - 10 47 - -
Tsu08g03827 78 SUPERFAMILY CCCH zinc finger 54 78 IPR036855 GO:0046872
Tsu08g03827 78 SMART c3hfinal6 54 78 IPR000571 GO:0046872
Tsu08g03827 78 SMART c3hfinal6 15 42 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03827 Tsu-Chr8 56596579 56596815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03827 13 78 C3H Transcription Factor Family AT1G68200 43.284 5.40e-14 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g03827 zf-CCCH 5.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03827 - K18753 ming:122081547 71.2478