Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03826 ATGAACCATCCTGTCAATGCTGCTGACAATGCTCCTAACAATGGACCAATTGTTCCTAAAGCTGTGAATTTTGAAGACGATGATGTAGCTATGGCTGTGACATTTGATACATTAAAGTTTCAAGAAGTGCAAGGAGATGCAGCAGTTGTCGCAGAACTGCAAGGAGATGCAGCAGTTGTCGAAGAACTGCAAGGAGATGCAGATGTTGTCGCAGAACTGCCTCAACATCAACCTCATGTGTCTCTTGGTCCATCAGACCCCTTGCACATGGAGCACAGTCTCTACAAGACAGTGTTGTGTAAAGACTTCATGAAAGGATATTGCCATAGACAAGATGGATGCAACTATGCACATGGCAACTTTGAGCGTCGCCAAAAGGAGCTGAGTTCTAACTATCATGTGCAGGATCACAGTCTCTACAAGACTGTGTTGTGTAAACACTTCATGAAAGGATATTGCCATAGACAAGATGGATGCAACTATGCACATAGCAACTTTGAGTTTCGCCAAAAGGAGCTGAGTCCTAACCGATTCAAATTCAAGCGAGTGGATGACGGCGTCGTCAAGCAAGGAGATTTCAGAACAGAATTGTGTGATTTCTGGTTGAAGTCGGTTCATTGCCAACACGGTGTTGGTTGTAGGTTTGCACACGGTCCTGCGCAACTTCGCAAGATTACTCTCCAAGATGATCTTTGGAGAACAAAGGCTTGCAGAAATTTTGCGGCTGGCAAGTGCTCACATGGGAATCGTTGTAGATTCCGCCACTAA 768 0.4492 MNHPVNAADNAPNNGPIVPKAVNFEDDDVAMAVTFDTLKFQEVQGDAAVVAELQGDAAVVEELQGDADVVAELPQHQPHVSLGPSDPLHMEHSLYKTVLCKDFMKGYCHRQDGCNYAHGNFERRQKELSSNYHVQDHSLYKTVLCKHFMKGYCHRQDGCNYAHSNFEFRQKELSPNRFKFKRVDDGVVKQGDFRTELCDFWLKSVHCQHGVGCRFAHGPAQLRKITLQDDLWRTKACRNFAAGKCSHGNRCRFRH 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03826 255 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Tsu08g03826 255 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
Tsu08g03826 255 PANTHER CCCH ZINC FINGER/TIS11-RELATED 187 255 IPR045877 GO:0003729
Tsu08g03826 255 PANTHER CCCH ZINC FINGER/TIS11-RELATED 87 124 IPR045877 GO:0003729
Tsu08g03826 255 PANTHER CCCH ZINC FINGER/TIS11-RELATED 136 177 IPR045877 GO:0003729
Tsu08g03826 255 Gene3D - 132 171 - -
Tsu08g03826 255 Gene3D - 187 224 - -
Tsu08g03826 255 Gene3D - 89 126 - -
Tsu08g03826 255 Gene3D - 226 255 - -
Tsu08g03826 255 ProSiteProfiles Zinc finger C3H1-type profile. 94 121 IPR000571 GO:0046872
Tsu08g03826 255 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 255 IPR000571 GO:0046872
Tsu08g03826 255 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Tsu08g03826 255 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Tsu08g03826 255 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 219 IPR000571 GO:0046872
Tsu08g03826 255 SUPERFAMILY CCCH zinc finger 190 223 IPR036855 GO:0046872
Tsu08g03826 255 SUPERFAMILY CCCH zinc finger 91 124 IPR036855 GO:0046872
Tsu08g03826 255 SUPERFAMILY CCCH zinc finger 136 169 IPR036855 GO:0046872
Tsu08g03826 255 SMART c3hfinal6 231 255 IPR000571 GO:0046872
Tsu08g03826 255 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Tsu08g03826 255 SMART c3hfinal6 94 120 IPR000571 GO:0046872
Tsu08g03826 255 SMART c3hfinal6 139 165 IPR000571 GO:0046872
Tsu08g03826 255 ProSiteProfiles Zinc finger C3H1-type profile. 231 255 IPR000571 GO:0046872
Tsu08g03826 255 SUPERFAMILY CCCH zinc finger 231 255 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03826 Tsu-Chr8 56592810 56595142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03826 187 255 C3H Transcription Factor Family AT1G68200 41.429 1.11e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g03826 zf-CCCH 4.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03826 K18753 - smin:v1.2.038065.t1 86.6557