Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03821 ATGGCACATAACACTGAGGTACATCataattcttcatcatcatctactcAACAACATGAAATCAAAGATAACAAAGCCAATCAAAAAGTACCATTTTACATGTTATTCAATTTTGCTGATAATATTGATATAACACTGATGATTGTTGGCACTATCTCTGCTGTGGCTAATGGATTTGCACAACCTCTCATGACACTTCTTTTTGGAAAAATCATTAATGCTTTTGGTTCATCTGATCCATCAGATGTTGTTAAACAAGTTTCTAAGATATCATTGCTATTTGTTTACCTGGCTGTTGGGTCTGGAATAGCATCATTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCTGCGAGGATTCGTAGTTTGTACTTGAAAACGATATTAAAGCAGGATATTGCATTCTTTGACACCGAAACAAACACAGGAGAGGTAATTGGTAGAATGTCTGGTGACACAATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAATTTGTTCAACTTGCTTCGAATTTTTTTGGTGGCTTTGTGATTGCCTTTATTAAAGGATGGCGCCTAGCTATAGTTTTACTCGCATGTATACCTTGTGTTGTTATTGTCGGTAGTTTCATATCCATATTGATGGCTAAAATGTCAAGTCGCGGACAAGTTGCTTATGCAGAAGCAGGAAATGTTGTTGATCAAACAGTTGGAGCCATCAGAACAGTTGCATCTTTTACCGGTGAGAAAAAAGCCATAGAGAAGTATAATAGCAAAATTAAAGTTGCTTATACTACAACGGTTCAACAAGGGATAATATCAGGGTTAGGAATGGGAACGCTTCTCCTTATTATCTTCTGCACTTATGGACTTGCCATGTGGTATGGTTCCAAACTAGTCATCGAGAAAGGATATAACGGTGGAACGGTCATGACTGTGATCATATCTCTTATGACTGGTGGACTATCACTAGGTCAAGCATCCCCAAGCATAAATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAAATGTTTGAGACCATTAAAAGAAAGCCGAAAATCGATGCCTATGACACCAGTGGCACTGTCTTGGAAGACATAAAGGGAGATATTGAGCTCAGAGATGTTTACTTTAGATACCCTGCAAGGCCAGATGTTCAGATATTTGCTGGATTCTCACTGTTTGTTCCAAGTGGCACAACTACTGCTTTGGTAGGTCAAAGTGGAAGCGGAAAGTCCACTGTCATCAGTTTATTGGAAAGATTCTATGACCCTGATGCTGGAGAAGTACTTATAGACGGCGTGAATTTGAAGAACTTGCAACTTAGATGGATAAGGGAACAGATTGGGTTGGTTAGTCAAGAACCTATCTTGTTTACTACTACTATCAGAGAGAACATAGCGTACGGGAAAGAAGGTGCTACTGATGAGGAGATAACAACAGCAATAACACTTGCCAATGCTAAGAAATTCATTGACAAACTGCCTCAGGGTCTTGACACCATGGCAGGGCAAAATGGGACTCAACTTTCTGGCGGACAAAAGCAAAGAATTGCAATTGCAAGAGCAATATTGAAGAATCCAAGAATCCTTCTTCTCGATGAAGCAACAAGTGCATTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATtagaaaaaattatgttaaaaagGACTACTGTTGTCGTAGCGCATCGTTTGACAACTATCAGAAATGCTGACACAATTGCAGTGGTTCATCAGGGGAAAATCGTGGAGAGAGGAACTCACAACGAGTTAACCGTGGATCCTTATGGTGCTTATTCTCAACTTATTCGTCTGcaagaaggagaaaaagaagatgaaggtaGCAGTAAGCTCGAAGTAGATACAGTCGACAATTTAAATATAGATAGTCACATGGCTAGATTTTCCACCCAACAAAGAACTTCTTTCGCGAGCCGAACTTCATCAGCGAGTCTTCAACATTCTCAGTCACTTAGAGGCTTATCTGGCCAAATAGAAGCAGATATTGAACAAGGTCAACCTGATAACAAGAAAAAACCCAAAAGGGTATCTATATTGCGTTTGGCCAAGTTGAACAAGCCTGAGGTTCCTGTCATATTGCTTGGAACCATTGCTGCATTAGTACACGGTGTCGTGTTCCCTATATTTGGCTTATTGTTTTCATCAGTCATTAGTATGTTTTATAAACCTCCAGAACAGCAGAGGAAAGAGTCCAGGTTCTGGTCACTTCTATATGTGGGTTTGGGTTTCGTTACTCTAGCGGTTTTGCCACTGCAGAATTACTTCTTTGGGATTGCTGGCGGAAAACTTATCGAGCGAATTCGTTCATTGACATTTGAAAAGATTGTGCACCAAGAAACTAAATGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACCGACGCTTCAACCGTGAAAAGTCTTGTTGGTGACACATTGGCCCTCATTGTGCAGAACATATCAACAATCACAGCTGGTCTAATTATAGCATTCACTGCAAATTGGATTCTCGCTTTTATAGTTTTGGCTGTGTCACCTATGGTTCTTTTGCAAGGAATGGTTCAGATGAAGTTTCTTAAAGGATTTAGTGCCGACGCCAAGGTGATGTATGAAGAGGCAAGTCAGGTAGCAAATGATGCTGTTAGTAGTATCAGAACTGTTGCATCATTTTGTGCAGAATCAAAAGTTATGGACATGTACaggaaaaaatgtttagggCCAGAGAAACAAGGCACTCGTTTGGGGCTTGTTAGTGGTGTAGGCTTTGGCTTCTCTTTTTTAGCTCTATATTGCACGAATGCTTTCACTTTCTACATAGGATCGGTTTTAGTGCACCACGGGAAAGCAACTTTTGCAGAAGTTTTCAGGGTTTTCTTTAGTTTAACAATGACAGCAATCGCCGTTTCCCAGTCTACTACATTGGCTCCAGACACAAACAAGGCCAAAGATTCTGCAGCTTCAATATTTGAAATTCTTGACAGCAAACCTGATATTGATTCCAGCAGTAATGAGGGTGTAACACAAGATACAGTAGTTGGTAATATTGAACTTACACATGTCAGTTTCAATTATCCAACAAGGCCTCAcattcaaattttcaaagattTAAGCCTAAGCATCCCATCTGGAAAGACTGTTGCCTTAGTTGGAGAAAGTGGCAGTGGAAAATCAACCGTTATAAGTCTCTTGGAGAGATTTTATGATCCTGATTCTGGATGTGTATTACTAGACGGAGTGGATATCAAAACTTTCAGATTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGCGCCAACATAGCTTATGGAAAAGAAGGAGATGCTACAGAAGATGAGATAATTGCAGCAGCTAATGCAGCCAATGCACACAACTTTATAAGCTCTCTTCCAAATGGTTATGATACATCAGTCGGTGAAAGAGGCACACAATTGTCAGGAGGACAAAAGCAACGTATTGCTATTGCAAGAGCCATGCTGAAAAACCCGAAAATACTTTTGCTAGATGAGGCAACAAGTGCACTTGATGCCGAATCTGAGCGTGTAGTTCAAGAGGCTCTAGATAGAGCGCTTGAAGTTGCAGCTGCAAAAGTGAAGGAAGTTCCGAACATGGAATTGATTTTCAGGTCTTTCATTCCACCAAGCTTGATTTCTGAGAAGATTGACGATGATCAATTTGAAGATGCGCGGTCTGAAAACCTCGATCTGTCTCTTTTGGTACTGCACCGCTCAAGCCGTCCCTCTCAACTCAGCCACTCAATCACCgatctctctctcactcactcaAGTGTTGATTCAGTGAAGTTGAAATGTGGATGA 3870 0.3959 MAHNTEVHHNSSSSSTQQHEIKDNKANQKVPFYMLFNFADNIDITLMIVGTISAVANGFAQPLMTLLFGKIINAFGSSDPSDVVKQVSKISLLFVYLAVGSGIASFLQVSCWMVTGERQAARIRSLYLKTILKQDIAFFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFVQLASNFFGGFVIAFIKGWRLAIVLLACIPCVVIVGSFISILMAKMSSRGQVAYAEAGNVVDQTVGAIRTVASFTGEKKAIEKYNSKIKVAYTTTVQQGIISGLGMGTLLLIIFCTYGLAMWYGSKLVIEKGYNGGTVMTVIISLMTGGLSLGQASPSINAFAAGQAAAYKMFETIKRKPKIDAYDTSGTVLEDIKGDIELRDVYFRYPARPDVQIFAGFSLFVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNLQLRWIREQIGLVSQEPILFTTTIRENIAYGKEGATDEEITTAITLANAKKFIDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKIMLKRTTVVVAHRLTTIRNADTIAVVHQGKIVERGTHNELTVDPYGAYSQLIRLQEGEKEDEGSSKLEVDTVDNLNIDSHMARFSTQQRTSFASRTSSASLQHSQSLRGLSGQIEADIEQGQPDNKKKPKRVSILRLAKLNKPEVPVILLGTIAALVHGVVFPIFGLLFSSVISMFYKPPEQQRKESRFWSLLYVGLGFVTLAVLPLQNYFFGIAGGKLIERIRSLTFEKIVHQETKWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNISTITAGLIIAFTANWILAFIVLAVSPMVLLQGMVQMKFLKGFSADAKVMYEEASQVANDAVSSIRTVASFCAESKVMDMYRKKCLGPEKQGTRLGLVSGVGFGFSFLALYCTNAFTFYIGSVLVHHGKATFAEVFRVFFSLTMTAIAVSQSTTLAPDTNKAKDSAASIFEILDSKPDIDSSSNEGVTQDTVVGNIELTHVSFNYPTRPHIQIFKDLSLSIPSGKTVALVGESGSGKSTVISLLERFYDPDSGCVLLDGVDIKTFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGDATEDEIIAAANAANAHNFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERVVQEALDRALEVAAAKVKEVPNMELIFRSFIPPSLISEKIDDDQFEDARSENLDLSLLVLHRSSRPSQLSHSITDLSLTHSSVDSVKLKCG 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03821 1289 Gene3D - 1012 1216 IPR027417 -
Tsu08g03821 1289 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524
Tsu08g03821 1289 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Tsu08g03821 1289 CDD ABC_6TM_Pgp_ABCB1_D2_like 690 1005 - -
Tsu08g03821 1289 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 701 987 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g03821 1289 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Tsu08g03821 1289 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 25 1207 IPR039421 -
Tsu08g03821 1289 SUPERFAMILY ABC transporter transmembrane region 35 353 IPR036640 GO:0005524|GO:0016021
Tsu08g03821 1289 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 334 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g03821 1289 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1022 1263 IPR003439 GO:0005524
Tsu08g03821 1289 ProSitePatterns ABC transporters family signature. 1162 1176 IPR017871 GO:0005524
Tsu08g03821 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1209 IPR027417 -
Tsu08g03821 1289 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 25 1207 - -
Tsu08g03821 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 607 IPR027417 -
Tsu08g03821 1289 MobiDBLite consensus disorder prediction 1 21 - -
Tsu08g03821 1289 Pfam ABC transporter transmembrane region 47 319 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g03821 1289 Pfam ABC transporter transmembrane region 701 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g03821 1289 Gene3D ABC transporter type 1, transmembrane domain 94 992 IPR036640 GO:0005524|GO:0016021
Tsu08g03821 1289 SUPERFAMILY ABC transporter transmembrane region 679 1004 IPR036640 GO:0005524|GO:0016021
Tsu08g03821 1289 Gene3D - 367 647 IPR027417 -
Tsu08g03821 1289 SMART AAA_5 396 582 IPR003593 -
Tsu08g03821 1289 SMART AAA_5 1049 1222 IPR003593 -
Tsu08g03821 1289 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 330 - -
Tsu08g03821 1289 Pfam ABC transporter 390 536 IPR003439 GO:0005524
Tsu08g03821 1289 Pfam ABC transporter 1041 1190 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03821 Tsu-Chr8 56556302 56567709 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03821 48 608 Calmodulin-binding Proteins AT2G36910 39.007 4.75e-118 397
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03821 08 56556302 56567709 Tsu08g03821 08 56556302 56567709 ECH