Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03813 ATGAGACTCTCTTCAGCTGGTTTTAGTCCTCCACCCCAAGAAGGGGAAAAGCGAGTCCTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTGCCAGCAGTTGGAAGTAGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCAACCAACAAGGAAGTGGATGGTCATATCCCAAACTATCCAAGCTTACCTCCTCAGCTTGTGTGTCAACTTCATAATTTGACTATGCACGCTGATGTGGAGACCGATGAAGTGTATGCGCAGATGACCTTGCAACCTCTGAATGCTCAAGAACAAAAAGAGGCTTACCTTCCAGCAGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACTTTGACTGCTAGTGACACAAGCACTCATGGGGGATTCTCCGTGCCTCGCCGCGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAGCAGCCTCCTGCTCAAGAGTTAATAGCAAGGGATTTGCATGGTAACGAATGGAAATTCAGACATATCTTCCGAGGTCAACCTAAAAGGCATCTACTTACAACTGGGTGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAATTGCTTCTCGGCATCCGCCGTGCTAGCCGACCACAAACTGTGATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTTGCTGCAGCAGCTCATGCGGCTCAAACCAATAGTCGTTTCACTATTTTCTATAACCCACGTGCTTGCCCATCAGAATTTGTGATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTTTTTGAAACAGAAGAGTCTAGTGTGCGACGATACATGGGTACAATAACGGGCATTTGTGACCTAGATTCTGTCCGGTGGCCGAACTCACATTGGCGATCTGTAAAGGTTGGGTGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTGTCTTTGTGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCACCATTCCCCCTTAGGCTTAAAAGACCTTGGCCTCCTGGATTGCCTTCATTCAATGGCATGAAAGATGAGGATTTTGGCATGAATTCTCCTTTGATGTGGCTCCGAGACGCCGATAGAGGGCTTCCGTCTCTTAATTTTCAAGGGATTGGTCTTAATCCTTGGATGCAACCAAGGTTTGATCCCTCCATGCTGAATATGCAAACAGATATGTATCAAGCTGTGGCTGCTGCTGCACTTCAGGACATGAGGAGTGTCGATCCTTCCAAACAGCATCCTAGTTCCTTACTTCAATTTCAGCAACCGCAGAACTTTCCAAACCGGACTGCTGCTTTAATGCAAGCGCAGATGTTGCAACAGTCACAATCTCAACAagcttttcaaaataataatccGGACAATCAAAATCTGTCGCAATCTCAGCTACAAACTCAGAGTCATCCTCAGCAGCATCTACAGCATCAGCACTTGTTCAATAATCAACTCCATAATCATAatcagcagcaacaacaaaGTCAACAACAAGTGGTGGATAATCACCAGAACTCTGGTTCGGTCTCTACAATGTCTCAGTTTGTTTCAGCACCACAACCTCAATCACCACCAGCTATGCAAGCTCTCTCTTCACTATGCCATCAGCAGAGTTTTTCTGATTCAAATGTGAACTCTTCAACTACTATTGTTTCTCCTTTGCACAGTATCATGGGTTCGTTTCCTCAGGATGAAACATCACACCTCATGAGCCTTCCTAGAACAAGTACTTGGGTTCCTGTTCAAAATTCAACTGGTTGGCCCTCCAAGCGTATTGCGGTGGATCCACTCCTTTCTTCGGGAGCATCTCAATGTATGCTGCCTCAGGTGGAGCAGTTAGGGAATCCACAGAATACCGTATCTCAAAATGCTATTACATTGCCACCGTTTCCTGGTAGGGAGTGCACAATTGACCAAGAAGGGAGCAATGATCAGCAAAGTAATCTGTTATTTGGTGTCAATATAGATCCCACGTCTCTTTTAATGCATAATGGGATGTCGAACTTCAAGGGGATTGGTGGCGGCAACAGCGACACCTCAACCATGCCCTATCATCAATCTTCTAATTACATGAACACCGCAGGCACCGATTCTTCGTTGAATCATGGAGTAACACCTAGTATTGGTGAATCCGGTTTGTTGCATACCCCAGAAAACGGGGAGCAAGGAAACAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAGTTCAGCAGCTACAATGAGCTGCGTAGTGAGCTCGCCCGAATGTTTGCACTTGAAGGCGAGTTGGAGGATCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGCGATGGCCCTTGGCCGTAA 2523 0.4542 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDGHIPNYPSLPPQLVCQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAQTNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGMKDEDFGMNSPLMWLRDADRGLPSLNFQGIGLNPWMQPRFDPSMLNMQTDMYQAVAAAALQDMRSVDPSKQHPSSLLQFQQPQNFPNRTAALMQAQMLQQSQSQQAFQNNNPDNQNLSQSQLQTQSHPQQHLQHQHLFNNQLHNHNQQQQQSQQQVVDNHQNSGSVSTMSQFVSAPQPQSPPAMQALSSLCHQQSFSDSNVNSSTTIVSPLHSIMGSFPQDETSHLMSLPRTSTWVPVQNSTGWPSKRIAVDPLLSSGASQCMLPQVEQLGNPQNTVSQNAITLPPFPGRECTIDQEGSNDQQSNLLFGVNIDPTSLLMHNGMSNFKGIGGGNSDTSTMPYHQSSNYMNTAGTDSSLNHGVTPSIGESGLLHTPENGEQGNNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFALEGELEDPVRSGWQLVFVDRENDVLLLGDGPWP 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03813 840 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Tsu08g03813 840 Gene3D - 291 363 - -
Tsu08g03813 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 840 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu08g03813 840 SMART B3_2 127 229 IPR003340 GO:0003677
Tsu08g03813 840 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Tsu08g03813 840 Gene3D - 769 840 - -
Tsu08g03813 840 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu08g03813 840 Gene3D - 125 228 IPR015300 -
Tsu08g03813 840 MobiDBLite consensus disorder prediction 481 572 - -
Tsu08g03813 840 CDD B3_DNA 126 227 IPR003340 GO:0003677
Tsu08g03813 840 ProSiteProfiles PB1 domain profile. 772 840 IPR000270 GO:0005515
Tsu08g03813 840 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Tsu08g03813 840 PANTHER AUXIN RESPONSE FACTOR 1 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03813 Tsu-Chr8 56474900 56481685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03813 1 483 B3 DNA Binding Superfamily AT1G30330 86.066 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu08g03813 B3 1.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03813 - - gmx:100798719 1353.96