Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03807 ATGGCTCTAGAAACAGCAGACCCGGACTGGTTAACCCACTATCTTAAGCATCAAAAGCTTCTAGAGCCTTTCACGAAGGAGCAATTACACGCTCTTGTGAAACAAGCGATTGAGAAGCATCCAGATCTAACGGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATTTTTGTTCACGGCCTTGGATGGGACACTACCGCTGAAACCCTAACTAGCGTATTTTCAAAGTATGGCGAAATTGAGGATTGTAAGGCGGTGACCGATAAGATTTTGCTGAAGGTTAGTAATCTTCGAATCATTATTTTCAACAATGTATCCTCTAATCCAATGGAACCTGTTGAAGCAAATGCTCACATTCAGCACTCCGAAGAACCTAATTACTCCTACCTTTTGAGTCTCTTTGATGATTCTGATTATCCCATGCCTATTCCAAAGCTGCGAGGCCCTTTACCACAGCTGCCAAGCCCTATTCTACAGCTGCGAGGCCCTTCTTCTCCACCGCAGCTTGGCCCTCCTTTTCCACCGCTGAGAGGTCCTCCTTTTCCTCCGCAGCTTGGCCCTCCTTTTCCACCGCTGCGTGGCATTTCTGCTCCACTGCCTCTGCCTCTTCCACAGCTGCGAGGCCCTTTACCACAGCTGCCAAGCCCTATTCTACAGCTGCGAGGCCCTTCTTCTCCACTGCAGCTTGGCCCTCGTTTTCCACCGCTGCGAGGCCCTTTTCCTCCGCAGCTTGGCCCTCCTTTTCCACCGCTGCGTGGCATTTCTGCTCCACTGCCTCTGGTTGTTCAGGGGAGTCCCAAAACAGAGATGTGCAAATTCTGGCAGAATAATCTCCCTTGCCCTCGTACTGTTTGCAGATTTGCTCATGGTGAGCATGAGCTTCACCTAGTGACATACCACAAAAGCTACAAAAGTAAGATCTGTAGAAATGTTTTCTCTGAGCGTGGCTGCGATTATGGCACCAGATGCCATTTCAAGCATCTTCCAGATAAATAA 1008 0.494 MALETADPDWLTHYLKHQKLLEPFTKEQLHALVKQAIEKHPDLTENVRQLADVDPAHRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKILLKVSNLRIIIFNNVSSNPMEPVEANAHIQHSEEPNYSYLLSLFDDSDYPMPIPKLRGPLPQLPSPILQLRGPSSPPQLGPPFPPLRGPPFPPQLGPPFPPLRGISAPLPLPLPQLRGPLPQLPSPILQLRGPSSPLQLGPRFPPLRGPFPPQLGPPFPPLRGISAPLPLVVQGSPKTEMCKFWQNNLPCPRTVCRFAHGEHELHLVTYHKSYKSKICRNVFSERGCDYGTRCHFKHLPDK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03807 335 Gene3D - 56 100 IPR012677 -
Tsu08g03807 335 SMART c3hfinal6 306 333 IPR000571 GO:0046872
Tsu08g03807 335 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Tsu08g03807 335 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 18 107 - -
Tsu08g03807 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 108 IPR000504 GO:0003723
Tsu08g03807 335 MobiDBLite consensus disorder prediction 169 189 - -
Tsu08g03807 335 ProSiteProfiles Zinc finger C3H1-type profile. 306 334 IPR000571 GO:0046872
Tsu08g03807 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 92 IPR000504 GO:0003723
Tsu08g03807 335 MobiDBLite consensus disorder prediction 167 189 - -
Tsu08g03807 335 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 18 107 - -
Tsu08g03807 335 SUPERFAMILY CCCH zinc finger 304 332 IPR036855 GO:0046872
Tsu08g03807 335 Gene3D - 301 334 - -
Tsu08g03807 335 Gene3D - 267 300 - -
Tsu08g03807 335 SUPERFAMILY RNA-binding domain, RBD 44 93 IPR035979 GO:0003676
Tsu08g03807 335 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03807 Tsu-Chr8 56395746 56404830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03807 6 106 C2H2 Transcription Factor Family AT2G19380 37.624 6.31e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03807 K12741 - vvi:100258161 137.117