Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03800 ATGGAAGATCTCGAAAGAATGGGTAGAGAACTCAAATGTCCTATCTGTTTAAGTTTAATTCATTCCGCTGTTTCACTCACCTGCAATCATCTTTTCTGCAACTCTTGTATAATTAAGTCAATGAAATCTGCATCTTCTTGTCCGGTTTGTAAAATACCCTTTGCTCGTCGAGAGGTTCGTCCTGCTCCTCAAATTGACAGTTTGGTTACTATCTACAAAAACATGGAAGCTGCTTCTGGAATCAATTTATTTGGAACTCAAAATCCACCTGCTGCCAAATCACTAGATGAGGACAAGCAATGTGAAGGGGATTCTAAGTCTGGTAAGAACGGAACTGGTGGGACTCATGAAAATCATCCCGAGGAGGAAAAAACCCCCAAGAGAAAGAAGTTGGCGAAGAAGCTTAAGGCCAGCACAAAAAGTTCGGCTTCTAACCGTGTAGAGCCTTCTTTTCCGGGTAAGAAAAGGGTTCAGGTGCCACAAGATATTCTTTCAGAGACTCCAATGAGGAATTTGAAGTCAGGAGGCTCTGTTAGTCTAATTAACAAAGAGGGAACACAAAAGGCGTTAACCAAGGGAAATGAAATGGAAATTCAAAGTGAAAAAGGTGATCAGGTGAAAGAACCATTCTTTTGGTTAAGAGAGGAAAAGGATGGTGAAATGTCAAGTCAACAGTCTGGTGAGGATCTAATTATTGAGGGTTCTACACCAGTTCCTCCTTCATTCAGTGATCTCCAAGATGCTAATGATGAAAGCCCTTCAAAACAAGCTCCATCGGACGAGGTGCAAAATAAACcatcttttgatttatttgataGTGAGATGTTTGAATGGACGCAAAAGCCATGCTCGCCTGAATTATTTTCAAGCCCCACCAAAATGCAGGTTGAGGATACTTTTGAGAATGATGAAAATATAGAGGAATTAGTGGCAGGGTCTCAAGAGCATCGTTTAAGTGCTGATGGTTACAATATAAACTTTGAGAATCCCATAGGTAATCAATTGGCTGATGTGTTGCCACAAGGCATGTCCTCTCAAATTAGAAGTTCTGATGATCTAAATGGAAAAAAGAAGACTACAAAGAGGGGCAGGAAGGCTAGAGAAAAATCCAAGGAAGACAATATTAGGGaacaaaaatctcaaaatgatgaaatgaatttggattcaaatataaaattaaaagatattgAGGATCAATCATTGGACAACAAGCACAGAGGTTCTAATCTGAAAAAGTCTAATAaaaagggcaagaaggtttcTTTTGTTACTAGTACAGATTCAACACCACACACTGCTTCTACAGTCTCCAATATATCAGGAGTTCGAAGCAATGGTAGAAGAGCAGCAGCTAAGAATTCATATACTACCGCGTCTAAACAAGATAATGAGATACATTCTCAGAAGATTGCTAGAAAACAAAGGCTGGATGTTGTGCATGAACCACCTGAAAATTTAACTTTAGTGCAAAATCAATGCAAAGAGCTTGCTGGATCTGCTTCATCTACTTTAGGTCTGCAGATGGATAATAGTAGAAAGGATGCTAATActgggaaaagaaaaagaagtttGTCCAGAAATTCTATGCCTTGCAGTAAAGAAAGGAAGAGTACTAAAAAGTCAAAAATTTCTCCTGAATTTATCTCTAGGACTAAAAATGATGAAGCAATTAAGCCGAATGAAAGTATTAAGCAAGGTACTGATGTCAGGCCTTCGAATGATTCTGCAAAAGAGAAACAGTGTCATTTGATGGATCAACCAGTTTTAAGGAAATGTGTTAACCATGTCAAAGACTATCAATGTGCTTTCTGTCTCTCATCAGAAGAATCAGAGGCTTCTGGCCCGATGGTGCACTATTTTGATGGCAAGCCTGTAACTGCTGATTATGAAGGAGGATCTAAAGTCATACATTGTCACAGGAATTGCACTGAAtgGGCCCCAAATGTATATTTTGAAGATGATAATGCAATAAACCTTGAAGCTGAAATAAGTAGAAGTCGGAGAATCAAATGTAGTTTTTGTGGACTTAAAGGAGCTGCACTCGGTTGCTTTGAGAAAAGTTGTCGAAGGAGCTTTCATGTTCCCTGTGCCAAGTGGACTCCTGAATGTCGATGGGATATGgaaaattttgTCATGTTATGCCCTCTGCATGCATCCTCCATGTTGCCGTATGAAAGTTCAGGATCCCAACACAGGAGCAAGAAACTCACAGCTAGTAAGGTTAAAAGCTATAGCTGCAAACATGACACTACAAGCCAGAGTCGTGTTACTCATGGATCTCACAAAAAAATTGTGCTGTGTTGTTCAGCTCTATCTGTACAGGAGAGgGATGTTGTTTCTGAATTTGAAAGAGTGTCCAAGGTTACAGTTTTGAAAACTTGGGATTCAAGTGTTACCCATGTAATAGCATCAACAGATGAAAATGGGGCATGCAGAAGGACTCTCAAAGTATTGTTGGGTATTCTAGAAGGAAAGTGGATTCTCAGCATTGAGTGGATCAAAGCTTGCATGAAAGAAACAGGATCTGTTGACGAGGAGCGTTATGAAGTTAATGTTGACATCCATGGAATTAAGGATGGTCCCCGTCTTGGACGACAAAGAGCATTGAACAAGCAACCAAAGCTTTTTGATGGCTACAAGTTCTATTTCATGGGAGATTTTATCCCGTCATACAAGGGTTATCTGCAAGACCTTGTGATCGCTGCCGGAGGGACAGTTCTGCACAGAAAACCAGTGTCAGGTGACCATCAAGCAATTCCACCTGATATGCATCCACACCAAACCCTCATAATCTACAGTCTTGAGCTTCCTGCTGAATGCAATCCTTTGGAAAAGGATGCAATTTTTAGCCAAAGGCGATGTGATGCAGAGGTTTTGGCAAGGCCTACTGGTTCAAAGGTTGCAAGTAATACATGGATTCTGAATTCAATTGCTGGCTGCAAGCTGCAAAGCCTTGCTCAATAA 2964 0.3897 MEDLERMGRELKCPICLSLIHSAVSLTCNHLFCNSCIIKSMKSASSCPVCKIPFARREVRPAPQIDSLVTIYKNMEAASGINLFGTQNPPAAKSLDEDKQCEGDSKSGKNGTGGTHENHPEEEKTPKRKKLAKKLKASTKSSASNRVEPSFPGKKRVQVPQDILSETPMRNLKSGGSVSLINKEGTQKALTKGNEMEIQSEKGDQVKEPFFWLREEKDGEMSSQQSGEDLIIEGSTPVPPSFSDLQDANDESPSKQAPSDEVQNKPSFDLFDSEMFEWTQKPCSPELFSSPTKMQVEDTFENDENIEELVAGSQEHRLSADGYNINFENPIGNQLADVLPQGMSSQIRSSDDLNGKKKTTKRGRKAREKSKEDNIREQKSQNDEMNLDSNIKLKDIEDQSLDNKHRGSNLKKSNKKGKKVSFVTSTDSTPHTASTVSNISGVRSNGRRAAAKNSYTTASKQDNEIHSQKIARKQRLDVVHEPPENLTLVQNQCKELAGSASSTLGLQMDNSRKDANTGKRKRSLSRNSMPCSKERKSTKKSKISPEFISRTKNDEAIKPNESIKQGTDVRPSNDSAKEKQCHLMDQPVLRKCVNHVKDYQCAFCLSSEESEASGPMVHYFDGKPVTADYEGGSKVIHCHRNCTEWAPNVYFEDDNAINLEAEISRSRRIKCSFCGLKGAALGCFEKSCRRSFHVPCAKWTPECRWDMENFVMLCPLHASSMLPYESSGSQHRSKKLTASKVKSYSCKHDTTSQSRVTHGSHKKIVLCCSALSVQERDVVSEFERVSKVTVLKTWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILSIEWIKACMKETGSVDEERYEVNVDIHGIKDGPRLGRQRALNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVIAAGGTVLHRKPVSGDHQAIPPDMHPHQTLIIYSLELPAECNPLEKDAIFSQRRCDAEVLARPTGSKVASNTWILNSIAGCKLQSLAQ 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03800 987 ProSiteProfiles Extended PHD (ePHD) domain profile. 598 718 IPR034732 -
Tsu08g03800 987 Pfam BRCA1 C Terminus (BRCT) domain 789 837 IPR001357 -
Tsu08g03800 987 MobiDBLite consensus disorder prediction 239 263 - -
Tsu08g03800 987 CDD ePHD 601 717 - -
Tsu08g03800 987 Pfam PHD-like zinc-binding domain 639 717 - -
Tsu08g03800 987 Gene3D BRCT domain 760 867 IPR036420 -
Tsu08g03800 987 MobiDBLite consensus disorder prediction 343 467 - -
Tsu08g03800 987 MobiDBLite consensus disorder prediction 366 408 - -
Tsu08g03800 987 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Tsu08g03800 987 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Tsu08g03800 987 SMART ring_2 13 50 IPR001841 -
Tsu08g03800 987 SMART ring_2 671 717 IPR001841 -
Tsu08g03800 987 MobiDBLite consensus disorder prediction 195 223 - -
Tsu08g03800 987 SMART PHD_3 670 718 IPR001965 -
Tsu08g03800 987 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 3 985 - -
Tsu08g03800 987 SMART BRCT_7 873 980 IPR001357 -
Tsu08g03800 987 SMART BRCT_7 757 840 IPR001357 -
Tsu08g03800 987 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Tsu08g03800 987 MobiDBLite consensus disorder prediction 88 160 - -
Tsu08g03800 987 SUPERFAMILY BRCT domain 764 860 IPR036420 -
Tsu08g03800 987 SUPERFAMILY BRCT domain 875 985 IPR036420 -
Tsu08g03800 987 MobiDBLite consensus disorder prediction 513 561 - -
Tsu08g03800 987 SUPERFAMILY RING/U-box 4 73 - -
Tsu08g03800 987 MobiDBLite consensus disorder prediction 500 577 - -
Tsu08g03800 987 MobiDBLite consensus disorder prediction 419 464 - -
Tsu08g03800 987 MobiDBLite consensus disorder prediction 186 268 - -
Tsu08g03800 987 Gene3D BRCT domain 872 979 IPR036420 -
Tsu08g03800 987 CDD BRCT_Bard1_rpt1 764 839 - -
Tsu08g03800 987 ProSiteProfiles BRCT domain profile. 871 987 IPR001357 -
Tsu08g03800 987 Coils Coil 368 388 - -
Tsu08g03800 987 ProSiteProfiles BRCT domain profile. 789 850 IPR001357 -
Tsu08g03800 987 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Tsu08g03800 987 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 720 IPR013083 -
Tsu08g03800 987 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 3 985 IPR031099 GO:0006281|GO:0006974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03800 Tsu-Chr8 56290512 56296026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03800 6 63 RAD5 or RAD16-like Gene Family AT5G22750 36.667 1.08e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03800 K10683 - gmx:100804958 1308.51