Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03788 ATGGTATTAGCCTATTCTCTTGGTCATATCTCTGGTGCTCATTTTAATCCTGCTGTTACTATTGCTCATGCTTCTACCAAAAGATTTCCATTAAAGCAGaTACCAGTTTATATACTTGCTCAACTCCTTGGATCAACACTTGCAAGTGCAGCTCTCAAACTTATATTCAGTGGCAAAGAAGATCAGTTTGTAGGAACTCTTCCAGCTGGTTCTAATCTACAAGCCTTTGTGGTTGAATTTATAATCACTTTCTACCTTATGTTTGTAATTTCTGGAGTTGCCACCGATAACAGAgcgGCCAATCACAGGAGCATGAATCCAGCAAGAAGTTTAGGACCAGCTATTGTAGACCATGAATTTAGAGGAATATGGATATATTTAGTGTCACCTATTTTAGGAGCATTGGCTGGTACATGGGCATATACTTTCATTAGATACACAAACAAGCCAGTACGTGAAATCACAAAGAGTGCTTCATTCGTCAAAGATTTAGGAAGAAAATGA 504 0.377 MVLAYSLGHISGAHFNPAVTIAHASTKRFPLKQIPVYILAQLLGSTLASAALKLIFSGKEDQFVGTLPAGSNLQAFVVEFIITFYLMFVISGVATDNRAANHRSMNPARSLGPAIVDHEFRGIWIYLVSPILGALAGTWAYTFIRYTNKPVREITKSASFVKDLGRK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03788 167 Gene3D Glycerol uptake facilitator protein. 1 102 IPR023271 -
Tsu08g03788 167 Gene3D Glycerol uptake facilitator protein. 103 157 IPR023271 -
Tsu08g03788 167 PRINTS Major intrinsic protein family signature 87 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03788 167 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03788 167 PRINTS Major intrinsic protein family signature 124 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03788 167 Pfam Major intrinsic protein 2 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03788 167 Pfam Major intrinsic protein 104 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g03788 167 ProSitePatterns MIP family signature. 14 22 IPR022357 -
Tsu08g03788 167 SUPERFAMILY Aquaporin-like 1 155 IPR023271 -
Tsu08g03788 167 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 100 - -
Tsu08g03788 167 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 103 164 - -
Tsu08g03788 167 PANTHER AQUAPORIN NIP2-1 1 100 IPR034294 -
Tsu08g03788 167 PANTHER AQUAPORIN NIP2-1 103 164 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03788 Tsu-Chr8 56157302 56158829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03788 1 167 Major Intrinsic Protein MIP AT5G37820 51.852 1.96e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03788 K09874 - gmx:100812577 263.077