Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03780 ATGAGGAGGAGGAATTGTAACTTGGAACTCTGCCTTTTTCCTACCTACAATTCTACCAATCACCCCATggtagaagaagaagatagtGAACAGAGTCCAATGCAAAATCAGTACCAGGCGCCACTGACAATTTTCTACGATGGCAAGATGTGTGTTACTGATGTCACAGAGTTTCAgGCTAAATCCATCTTAATGCTAGCAAATAAAAAGGTACAAGAAAATGTGAAGACACCAACAGGGTCAGTaccaacaacaccaacaatTGTAGAATCTCCTCATCAATTGTATAGTCCTGGACCTGGTCTTTCCATGAAGAGATCTTTGCAACGTTTTCTACAAAAGAGAAAGAATCGAATCCAAGAATCATCTCCATATAATCACTag 384 0.3568 MRRRNCNLELCLFPTYNSTNHPMVEEEDSEQSPMQNQYQAPLTIFYDGKMCVTDVTEFQAKSILMLANKKVQENVKTPTGSVPTTPTIVESPHQLYSPGPGLSMKRSLQRFLQKRKNRIQESSPYNH 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03780 127 MobiDBLite consensus disorder prediction 76 92 - -
Tsu08g03780 127 Pfam Jas motif 105 125 IPR018467 -
Tsu08g03780 127 SMART tify_2 35 69 IPR010399 -
Tsu08g03780 127 MobiDBLite consensus disorder prediction 76 103 - -
Tsu08g03780 127 ProSiteProfiles Tify domain profile. 35 69 IPR010399 -
Tsu08g03780 127 PANTHER - 3 127 - -
Tsu08g03780 127 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 3 127 IPR040390 -
Tsu08g03780 127 Pfam tify domain 39 68 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03780 Tsu-Chr8 56071266 56073181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03780 3 126 Tify Gene Family AT1G30135 44.531 9.72e-26 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tsu08g03780 tify 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03780 - - gmx:100803886 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03780 08 56071266 56073181 Tsu08g03780 08 56071266 56073181 ECH