Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03752 atgtCATTTTCCAGTGTCAAAAACTTCTTCCAGAGGTTCTGGTTGGATGAAATGGAAATGGGAAGTTATACGCATAGCAGCTTTTTGTCTAGTGATCTTCTACCATCTCTTGGCGCACAAGTAAACCGGGAAACTAAACCACAAAAATACGTAATCTACCCATTCAATCCTCATTATAGGGTTTGGGAATTGTTACTGGTTGTTCTAGTCATTTACTCGGCTTGGATATGCCCCTTTGAGTTTGCCTTTCTGACTTATAAGGAAGATGGACTATTCATCATAGACAACATTGTCAATGGCTTCTTCGCCATCGACATAGTGCTTACATTCTTCGTTGCATACCAAGATAAGGATTCTTATCTTGTCGTTGATGATCCAAAGAAAATTGCAATCagGTACATATCCACCTGGTTTGCTTTGGATATTTGCTCAACAGCCCCACTTGAGTCCATTAGCCTCCTCTTCATTAATCATAACAGTGAGCTTGGTTtcaaacttcttaacatgttgCGACTATGGCGTCTTAACCGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAATTATTTCTGGGTTAGATGCACAAAGCTCTTTGCTGTAACCTTGTTTGCAGTACACTGTGCAGGATGCTTTAACTATCTAATTGCAGATGTGTATCCTGATTCCAGAAAAACTTGGATAGGTGCTATGTTCCCAAATTTTAAAGAAGAAAGTCTTTGGGACAGATATGTAACTGCAATATACTGGTCCATCGTCACACTTACTACAACTGGCTATGGAGATTTACATGCAGAGAACACCATAGAGATGCTGTTTGATATCACTTACATGCTGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTTCACTGGACCAGCCGCACCCAAGATTTTCGGGATACAGTCAAAGCAGCTTCTGAGTTTGCTTCAAGAAATCATCTACCACATCGCGTGCACAATCAAATGTTGGCGCACATATGTTTGAGGTTTAAAACAGAAGGAATGAAGCAGCAAGAAACGTTAAACGATCTTCCAAAGGCAATTCGTTCAAGCATCGCACACCATCTCTTTTTTCCTGTTGTGCAGAAGGTCTACCTCTTTCAAGGTGTCTCCCACGACTTCCTACTCCAACTGGTTTCGGAGATGAAAGCGGAGTATTTCCCACCGAAGGAAGATGTGATACTGCAAAATGAATCTCCTACAGACCTTTATGTGCTGGTTTCAGGGGCAGTGGTGATTCTTGACAAGGCAACTGCAGTAGATACATTTGGAGAGTTTGGAGTTTTATATCATGTACCGCAGCCTTTCACAGTTCGAACCACAGAGCTTTCTCAGATATTAAGACTCAACAGTACATCCTTAATGAATGTTTTACAAGCAAATCCAGGGGATGCACAGATTGTAATGAATAATCTTTCAATGAGATTAAGGGAGCGTGAAGGGTTCGTCTCTGAATATCCACACGCAGATCTTGGATTGGTTATGCAGAAACTGCTTCATGGAGGTAACACAATAGAAAGCTCTACTCAAgagtttaaaaataatttacctTCCTTAATGCATGAAAGAGAAAACATAAATATCAGAGACTCAGAGAATAATTTGCATATTGTGACTAATGGTGTTCATTTAGTTCCTAATAACATGATACCTGAAGACTGCAAAAGAGATCTCCATGCCGCTACACTGACTGCACATAAGGGGAAACTAGACATTGTTGAAATTCTGCTTGAAAGAGATGCAAAAGCAAAGAACACAAATGACATAGGGTGGACACAAAAAGCTCTAGTACAACAGTTAAAAAACAAGAGCATTTCTGACCATACAATGAATTACGAAAGCGAGAAGAAATCAGATGAACATAGAATAGAGATCGTGGAGCCACAAATCCTTAAACTTGGAAGGAATGGCTCAACCAGAAACAGTAGACAGGATGGTATTAGAACTATTAACATCCCACTAGAGAAAGTATACACAGACTACAATTCAAGAAATTCCAATTGTCCAAGTGAAATAGAAATGGCAAGGTTCACCAAGAAGAGGGTAACAATCCATTTGCTAAGTGAATGGAGAAGTAGCTCAAATGGACAACACGGAAAACTGATAATTCTACCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAACCCCACAAAAGTAATTAATAAAGAGAATGCAGAGATAGACGACATTGATGTCATTCGAGATGGAGCTATCTTGCTCGGAATCAGATATTGTAGAGTAACTTCGAAGAAGCATCTCACACTGTCCCAACAAAATCTGAATTTCTCAAAACCATCTATTGTATGCCTTCAATGA 2373 0.3911 MSFSSVKNFFQRFWLDEMEMGSYTHSSFLSSDLLPSLGAQVNRETKPQKYVIYPFNPHYRVWELLLVVLVIYSAWICPFEFAFLTYKEDGLFIIDNIVNGFFAIDIVLTFFVAYQDKDSYLVVDDPKKIAIRYISTWFALDICSTAPLESISLLFINHNSELGFKLLNMLRLWRLNRVSSLFARLEKDIRFNYFWVRCTKLFAVTLFAVHCAGCFNYLIADVYPDSRKTWIGAMFPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTSYIIGNMTNLVVHWTSRTQDFRDTVKAASEFASRNHLPHRVHNQMLAHICLRFKTEGMKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLLQLVSEMKAEYFPPKEDVILQNESPTDLYVLVSGAVVILDKATAVDTFGEFGVLYHVPQPFTVRTTELSQILRLNSTSLMNVLQANPGDAQIVMNNLSMRLREREGFVSEYPHADLGLVMQKLLHGGNTIESSTQEFKNNLPSLMHERENINIRDSENNLHIVTNGVHLVPNNMIPEDCKRDLHAATLTAHKGKLDIVEILLERDAKAKNTNDIGWTQKALVQQLKNKSISDHTMNYESEKKSDEHRIEIVEPQILKLGRNGSTRNSRQDGIRTINIPLEKVYTDYNSRNSNCPSEIEMARFTKKRVTIHLLSEWRSSSNGQHGKLIILPDSLEELLKIAGEKFGGFNPTKVINKENAEIDDIDVIRDGAILLGIRYCRVTSKKHLTLSQQNLNFSKPSIVCLQ 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03752 790 Pfam Ion transport protein 60 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu08g03752 790 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g03752 790 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g03752 790 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g03752 790 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g03752 790 CDD CAP_ED 377 480 IPR000595 -
Tsu08g03752 790 Gene3D Jelly Rolls 367 490 IPR014710 -
Tsu08g03752 790 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 759 - -
Tsu08g03752 790 Pfam Cyclic nucleotide-binding domain 397 471 IPR000595 -
Tsu08g03752 790 SUPERFAMILY cAMP-binding domain-like 304 488 IPR018490 -
Tsu08g03752 790 Gene3D Helix hairpin bin 301 366 - -
Tsu08g03752 790 Gene3D - 60 300 - -
Tsu08g03752 790 ProSiteProfiles KHA domain profile. 692 778 IPR021789 -
Tsu08g03752 790 ProSiteProfiles cAMP/cGMP binding motif profile. 377 486 IPR000595 -
Tsu08g03752 790 PANTHER POTASSIUM CHANNEL AKT1 1 759 IPR045319 GO:0005249|GO:0006813
Tsu08g03752 790 SMART cnmp_10 377 484 IPR000595 -
Tsu08g03752 790 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Tsu08g03752 790 Pfam KHA, dimerisation domain of potassium ion channel 691 758 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03752 Tsu-Chr8 55796239 55800479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03752 1 492 Ion Channels AT5G46240 71.116 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03752 K21867 - gmx:100811356 1125.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03752 08 55796239 55800479 Tsu08g03752 08 55796239 55800479 ECH