Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03744 ATGGAGCACTATCCTCGCTCCACTCAACCTGATCCGTCACCGGAATGGACCGGTCCGGATTCTCAAACCGGTCTTGAAGAACCTATGTGGCAATTGGGATTAGGTTCTGCTGCTGGTGAAGATTCGTATCCACTTCGACCTGATGAGATTGATTGTACATACTATTTGAGAACTGGTTTTTGTGGCTTTGGTTCTAGGTGTCGGTTCAATCATCCTCGTGACCGCGGCGCGGTTATTGGAGCTGCTGCTAGGACTGTAGGAGAGTACGTCATGGCCGACATCGAGGAGCCGATCGAGGAGAACCGGTTGATCGACACAATAATAGATCCGGCGTTGTCTTGGGTCGCGCCCGAGCCACGGGGAATAGCCTCGTCGATTTTCGAAGGGGATACGAGCGCGTACACAATCGTCGAGGACGTAGCAGAAGGTGCTCCCGCGAGCTGGGAAGCCCATGTGCCCGAGGAGGGAAAGAGAATTTGCTCGGCATTTTCCGAGGGCGGATTCGCTATGTACGAATTCGCCTTTAAAGACTTGGGATTCAGATTGCCCTTCAGCGACTTTGCAGTGGGCGTCTTCGACAGGTTGAGATTGGCACCATCTCAGCTGCATCTGAATTCCCTGGCGTTTATTCGGGCGTTCGAGCAGCTCTGCGACTACTTGGATGTCGAGCCTACCCTGCCATTATTCTTCCGCATCTTCAAGATCCAACGACAAACATTTCGGGGAAGGCAAGGTTGGGTCTCTTTGAAACAGCACCAGGTGAAGATCTTTAGGATGTTTGTGGACTCTGTCCGGGGATTCAAGGAGAGATATTACGTGGTGAGACCAGTGTCCCCAGAGGCGAGAAAGTCTGTGTACAAGACTGTTGCGACCCTGGGCGAGGAGGGTGTCCCCGTCAACCGAGAAGTTCCACGTTTTCCTCTCTGTTGGTCGGACAAGCACTTCGCTCTGCCCACAGATGTTTATTTAGTTCGAGATGAGTCGCTCTCCCCGGCAGAGCGCGCTGGGTATGAAAGGATCAGGTCTTATGTTGCGGGCTTCCAGCCCGTCAGGTTTATGACGAAAGCGGGTGTGCCCGCCAAGGATGCGTTCGGGAATCCGAGGGTGGAGCCCCGTTATGTAAACACCAAGTCTCTGCTCGAATGTGCGAGCAGGGATGATAGGAAAACTTTGTTAGATAATATGGCCGACTTCGCGGATGAGCTCGTCAAGATTGCCGCCGACAAGAAAAGGGTGGCCAAGAAGAAACCTGCCCGTTCGGCGATGTCAAACGTTATGCTTTCGGCCTCGTCTACTCCAGGCAGCACTTCGTCTCCTGTCGGCGCCAAGGGGAGTCCCTCCATCGTTAAGCCTCCTGCTGCGAAGAGGCAAAGGGAAGATTTTATAGTCGACCTTGATGCCGTCGAGGAGGCAAAGGGGTTCATGTTCACTCCTCTCTTCGGCCTGCCCGGATATCTCAAACAGCATCCGGCGACAATTTTGCGGTCGGAGAAGGAGGCCATTATGAAGTTCAGCCCAGAGGAGATGGAGGCTCAACTCGCCAAGGATTTTGCTGCTACTCTCCGGCTGGCGGAGACGGCTATGGTGTTAAATGAGAGATTGCCGAGCAGAGATGTGGAGAGGTTGACGAAGAGAAATGTCGAGCTCGAGGCTGAGGTGCTGCAGCTCGGGAACACCGTGACCGACCTGCAAGGTAAGCAAGAGAATTACGCCAACTTGGCAGCTGACTTGCGCAAGGTCGAGAAGGAAGTTGCCGAGCTGAAGATTACTAATGCTGCGGAGAGGAAAGGTAAAGAGAAGGCTGAGGATGAGCTGGAGTCTCTTCGACAGATGATGGCGTCTTCCGAGGACGAGCCCGAGCATGTGCGGGGTTTGGTTACCCGAGCAGAGCTAGTTGGGGAGATCCGGGCTCAGATGGGGAAGGTTACTAATGAAAATGTTGTTCGAGATTCCAGTGGGAAAGATATCCAATCCTAG 1977 0.5352 MEHYPRSTQPDPSPEWTGPDSQTGLEEPMWQLGLGSAAGEDSYPLRPDEIDCTYYLRTGFCGFGSRCRFNHPRDRGAVIGAAARTVGEYVMADIEEPIEENRLIDTIIDPALSWVAPEPRGIASSIFEGDTSAYTIVEDVAEGAPASWEAHVPEEGKRICSAFSEGGFAMYEFAFKDLGFRLPFSDFAVGVFDRLRLAPSQLHLNSLAFIRAFEQLCDYLDVEPTLPLFFRIFKIQRQTFRGRQGWVSLKQHQVKIFRMFVDSVRGFKERYYVVRPVSPEARKSVYKTVATLGEEGVPVNREVPRFPLCWSDKHFALPTDVYLVRDESLSPAERAGYERIRSYVAGFQPVRFMTKAGVPAKDAFGNPRVEPRYVNTKSLLECASRDDRKTLLDNMADFADELVKIAADKKRVAKKKPARSAMSNVMLSASSTPGSTSSPVGAKGSPSIVKPPAAKRQREDFIVDLDAVEEAKGFMFTPLFGLPGYLKQHPATILRSEKEAIMKFSPEEMEAQLAKDFAATLRLAETAMVLNERLPSRDVERLTKRNVELEAEVLQLGNTVTDLQGKQENYANLAADLRKVEKEVAELKITNAAERKGKEKAEDELESLRQMMASSEDEPEHVRGLVTRAELVGEIRAQMGKVTNENVVRDSSGKDIQS 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03744 658 MobiDBLite consensus disorder prediction 422 453 - -
Tsu08g03744 658 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 73 IPR000571 GO:0046872
Tsu08g03744 658 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Tsu08g03744 658 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 90 - -
Tsu08g03744 658 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
Tsu08g03744 658 Pfam Putative gypsy type transposon 177 236 - -
Tsu08g03744 658 Gene3D - 42 101 - -
Tsu08g03744 658 PANTHER PROTEIN PHOSPHATASE RELATED 1 90 - -
Tsu08g03744 658 Coils Coil 563 618 - -
Tsu08g03744 658 MobiDBLite consensus disorder prediction 423 443 - -
Tsu08g03744 658 MobiDBLite consensus disorder prediction 1 26 - -
Tsu08g03744 658 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Tsu08g03744 658 Coils Coil 539 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03744 Tsu-Chr8 55674827 55687762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03744 11 89 C2H2 Transcription Factor Family AT5G18550 55.000 1.56e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g03744 Transposase_28 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03744 - - gmx:100812433 149.443