Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03742 ATGTTTGTGTTTGATAATCAGGGAGCAGCACTTTGCACTCATTTCGCACAGCGTGGTATATGCAAGTTTGGTCCTGCATGTAAATTCGATCATCCTATTGCATCCCTAAGTTACAGTCCATCTGCTTCTTCCTTGACAGATGCGCCAGTTGCACCCTACTTCGTCGCTTCATCTGTTGGTACTCTTgctccttcatcttcttcaccagaGTTGCAGTCCGAACCTACCGCAGGATCCAGCAGGGAGTCTGTTCCACCCAGAATATCTTCATCAGTAAGCATATCGACCGGATCAGTTGGCTTGCCTTTGTCAACTAGTGGACCTGTTTCTCAATCAAGCACTCGGAGTTCCAGTCCTTTAGCACCTGCCAGTACGACAACAAGTAACAATGTCTCTCACACCTCAAGCTAA 411 0.4453 MFVFDNQGAALCTHFAQRGICKFGPACKFDHPIASLSYSPSASSLTDAPVAPYFVASSVGTLAPSSSSPELQSEPTAGSSRESVPPRISSSVSISTGSVGLPLSTSGPVSQSSTRSSSPLAPASTTTSNNVSHTSS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03742 136 Gene3D - 4 73 - -
Tsu08g03742 136 ProSiteProfiles Zinc finger C3H1-type profile. 6 34 IPR000571 GO:0046872
Tsu08g03742 136 SMART c3hfinal6 6 33 IPR000571 GO:0046872
Tsu08g03742 136 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 9 32 IPR000571 GO:0046872
Tsu08g03742 136 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 7 126 - -
Tsu08g03742 136 MobiDBLite consensus disorder prediction 61 136 - -
Tsu08g03742 136 PANTHER PROTEIN PHOSPHATASE RELATED 7 126 - -
Tsu08g03742 136 SUPERFAMILY CCCH zinc finger 9 36 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03742 8 68 C2H2 Transcription Factor Family AT5G18550 77.778 1.60e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g03742 zf-CCCH 1.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03742 - - zju:107426911 117.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03742 08 55650997 55651407 Tsu08g03742 08 55650997 55651407 ECH