Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03741 ATGTCAACTTCTAGAACCTCAAACACTTCCCTTAAAGGACATAATCATCAACACAATCAAACTCAAATTAATCTATCTCTTCTTAAACGAAACACGTCGGTTTGTAGCGAAAAAAGAGGGagaagaaaacaaacagaaCCAGGTAAGTTTCTTGGTGTAAGGAGAAGACCTTGGGGTAGATATGCAGCTGAAATTAGAGATCCTAGTACTAAAGAAAGACATTGGCTTGGAACATTTGATACTGCTGAAGAAGCTGCTTTTGCTTATGATAAAGCTGCTCTTTCCATCAAAGGTAGCAATGCTAgaacaaatttcatctattctTCTGAATCTGATGAAACCAATCTTCACAATGATGTTACTTCTTTAGATGTTCAAAAAACACAACCAACCAATCAAATTGAAGAACAACATTCTTCtcatttgaacaatttgaacAATGAAAATCTGTTTTTCTCTAATGATTATAATAACTCAGGATATCTTGAATGCATTGTTCCtgttaattgtttcaaaccAATTTCCAACAACAATTCAAACTTTGATCATAATAGCAATACAAATGGTTCAAGTGAACATCAAAATGTTGTTGATTCCATTAGCACAACAAATTACTTCATGCAGGATCAATCATTTTATGATCACTACACTCCATTCTCTCAAGAATCAATTAACATTGACACAAGTGAAAGTAGTGAAGGATTATCATGGGATTGCAATTACAATGAACTTTCAGCTATTTTTAACAAACCACTAAGGAGTGAAAGTTCAAGCTATGGACTAATGACAACTCATGATGTTTCTTCAACTACCTATTCTTCTCCATCGTACTCTTCTTTCGGCGATGTTGACATGGGATACTCACTCTTCTGA 873 0.3196 MSTSRTSNTSLKGHNHQHNQTQINLSLLKRNTSVCSEKRGRRKQTEPGKFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAFAYDKAALSIKGSNARTNFIYSSESDETNLHNDVTSLDVQKTQPTNQIEEQHSSHLNNLNNENLFFSNDYNNSGYLECIVPVNCFKPISNNNSNFDHNSNTNGSSEHQNVVDSISTTNYFMQDQSFYDHYTPFSQESINIDTSESSEGLSWDCNYNELSAIFNKPLRSESSSYGLMTTHDVSSTTYSSPSYSSFGDVDMGYSLF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03741 290 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Tsu08g03741 290 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Tsu08g03741 290 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Tsu08g03741 290 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Tsu08g03741 290 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 290 - -
Tsu08g03741 290 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Tsu08g03741 290 MobiDBLite consensus disorder prediction 1 22 - -
Tsu08g03741 290 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 290 - -
Tsu08g03741 290 Pfam AP2 domain 50 98 IPR001471 GO:0003700|GO:0006355
Tsu08g03741 290 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Tsu08g03741 290 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03741 Tsu-Chr8 55648508 55649380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03741 1 122 AP2-EREBP Transcription Factor Family AT5G18560 56.934 1.16e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g03741 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03741 - - mtr:MTR_2g019750 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04208 04 50359360 50360361 Tsu08g03741 08 55648508 55649380 PCT