Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03738 ATGTTTTGTCACTCTCGCAGAGCATTGCTCTGCCCTAACCTATCATTCAAAACCCAAAAACCCtcttcatttcttcttcttctccaacaTTTTTCCACTTCCAATCAACAACAATCTTTCACAATCAACTACCTCGTTCAAAACATCGGTTTCTCCCATGAAACAGCTTCAAAACTCTCTAACCAAGTTCATTTCAAAGACTCACAAAAACCAGACACAGTCTTAGAATTTTTCAAATCCTATGGCTTctcaaataatcacttatttcgTATAATCAAAACTCGCCCAGATATTCTCTCTTTTGATCTTAAGAAAACCATTATcccaaaattcaattttcttgtCTCAAAGGGTGCTTCAAAATCTGATCTTGTTCAAATCATAACTAAAACCCCTGTTATCTTATGTCAAAGTTTGGAAAATACTATCACCCCATCTTATGATTTTGTGAAAAGATTCTTACTTTCTGATCAATCAACTATtgaatttctcaaacattgtgATAGAatgattttttctaaaaaaccaTTTCAGAATATTCAACTTTTGATTGAAAATGGTGTTCCTGAGTCAAATATGGTTATTTTGCTACGAAATTGGTATGCTATACTTGGTGAAAATCCTCTTTTTTTGAATAGGGCTGTGGTGGAAGTAAAGGAATTGGGATTTAACCCTAAATCGACGGTTTTCATGGTGGCGTTGCGCGCTAAGGTTAATAATAAGTCGCTTTGGGGAAGGAAGATTGATGTGTATAAGAAATGGGGTTGGTCTGAAGAGAATGTTGTATCAGCATTTGTGAAATATCCTTGGTGTATGTTGTCATCTGTGGCGAAAATTGAGTCAGTGATGAAGTTTTTTGTCAATGAAATGGGTTGGGATTCTGTTGTGCTTGCTAAGTATCCAGTACTTTTTTTGTATAGTTTGGAGAAAAGGGTTATTCCTAGAGCATTTGTTTTGCAATTTCTTGAATCCAAAGGTTTGATTATGGATGCCAAATTGGGTACACCTTACAAACTTTCTGAGAGTGTGTTTTTAGAGAGATATGTGACTTGCTTTAAGGAAGAAGCTTCTCAGTTGTTGAAGTTGTATGAAGATAAGAAAGATGTTTCAAATAGGGTTTTGAAAGAAGGTTTGCGACCGCGAGCTGCGAAGCAAAATCAAGGGTCTCCGTGA 1173 0.3316 MFCHSRRALLCPNLSFKTQKPSSFLLLLQHFSTSNQQQSFTINYLVQNIGFSHETASKLSNQVHFKDSQKPDTVLEFFKSYGFSNNHLFRIIKTRPDILSFDLKKTIIPKFNFLVSKGASKSDLVQIITKTPVILCQSLENTITPSYDFVKRFLLSDQSTIEFLKHCDRMIFSKKPFQNIQLLIENGVPESNMVILLRNWYAILGENPLFLNRAVVEVKELGFNPKSTVFMVALRAKVNNKSLWGRKIDVYKKWGWSEENVVSAFVKYPWCMLSSVAKIESVMKFFVNEMGWDSVVLAKYPVLFLYSLEKRVIPRAFVLQFLESKGLIMDAKLGTPYKLSESVFLERYVTCFKEEASQLLKLYEDKKDVSNRVLKEGLRPRAAKQNQGSP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03738 390 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 23 371 - -
Tsu08g03738 390 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Tsu08g03738 390 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Tsu08g03738 390 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Tsu08g03738 390 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Tsu08g03738 390 Pfam mTERF 246 333 IPR003690 GO:0003690|GO:0006355
Tsu08g03738 390 Pfam mTERF 75 204 IPR003690 GO:0003690|GO:0006355
Tsu08g03738 390 Gene3D Transcription termination factor 3, mitochondrial 176 362 IPR038538 -
Tsu08g03738 390 Gene3D Transcription termination factor 3, mitochondrial 34 175 IPR038538 -
Tsu08g03738 390 PANTHER CGI-12 PROTEIN-RELATED 23 371 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03738 Tsu-Chr8 55620279 55621834 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu08g03738 mTERF 5.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03738 K15032 - gmx:102663105 388.267