Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03723 ATGGCGAAACTTTCGAAACCACAAGCTTCTTCCGACGAAGCACTCTCGAATTCTTCAAGTTCTTCGGAGGAAGAGCAAGTGAATGATCAGATCaacgaagaagaagatgaagaggagctTGAAGCTGTAGCTCGTGCTGCTAGTTCtgacgacgatgatgatgaagttgttGGTGATAATCCGCCGGATTCTGATGAAGATATTGCTGCTGAAGACGGTGACGATGATGAACAGGGAGGAGATAATGAAGCTCCTGAAATAAGCAAGCGTGAGAAGGCTAGATTAAGAGAAatgcaaaaattgaagaaacaGAAAGTTCAGGAGATACTGGATGCTCAAAACGCTGCCATTGAAGCTGACATGAATAATAGAGGAAAGGGACGTTTGAAGTATCTCTTACAGCAGACTGAGCTGTTCGCGCATTTTGCAAAAGGTGATCCATCATCATCTCAAAAGAAGTCAAGAGGAAGTGGTCGCCATGCATCAAAAGTGACTgaagaggaggaagatgaagagTACTTGAAAGGAGAAGAAGACGGTGTTGCAAACACTCGTTTGGTGACACAACCATCATGTATTCAAGGGAAGATGAGGGATTACCAATTGGCTGGACTAAACTGGCTCATTCGATTGTATGAGAATGGAATAAATGGAATTCTTGCCGATGAGATGGGGCTTGGTAAAACATTGCAAACTATATCTTTAATGGGTTACTTGCATGAGTTCAGAGGAATTAAAGGCCCTCATATGGTAGTTGCCCCAAAATCAACTCTTGGGAATTGGATGAATGAGATTCGTCGCTTTTGTCCTATTTTGCGTGCTGTAAAATTCCTGGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCTGGGAAGTTTGATGTTTGTGTTACAAGTTTTGAAATGGCTATCAAGGAGAAGACTACTTTACGTCGATTTAGTTGGCGTTACATAATTATTGATGAAGCTCATCGAATCAAGAACGAGAATTCATTGCTCTCTAAAACAATGAGGATTTACAATACAAACTATCGCCTCCTTATCACTGGCACACCACTTCAGAATAATCTTCATGAACTGTGGTCTCTTCTCAACTTTCTTTTGCCCGAAATTTTTAGTTCTGCTGAAACCTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAAGAAACCATTCTTAAAGTGGGCATGTCCCAATTGCAGAAACAATATTATAAAGCATTACTGCAGAAGGATCTCGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCCTGAATATAGCTATGCAACTACGGAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCGGGTCCTCCCTATACAACAGGAGATCATCTCATTACCAATGCTGGTAAAATGGTTCTTTTGGATAAGTTGCTTCCTAAATTAAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTCCGTGGATATCAATATTGTCGCATAGATGGCAACACTGGCGGGGATGATCGTGATGCTTCCATTGATGCTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCCGGGGGTCTTGGTATTAATCTTGCAACTGCTGATGTTGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTACAGGCCCAGGATCGTGCTCATAGGATAGGTCAGAAAAAAGAAGTTCAAGTTTTTCGTTTTTGCACTGAGTATACAATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAACTTGCACTTGATGCTTTGGTGATTCAACAAGGGCGATTGGCCGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCTGAAATGGTTTTCAGTTCCAAAGATAGTACAATTACAGATGAGGATATTGATAGGATTATTGCCAAAGGAGAAGAAGCAACTGCGGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCCGAGTTATACGACTTTGATGATGATAAGGATGATAacaagtttgattttaaaaaaattgtgagtgATAACTGGATTGAACCACCAAGAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAACAAACTATGCGCCAAGGTGGACCGACAAAGCCAAAGGAGCCCCGCATTCCGAGGATGCCACAGTTGCATGATTTCCAGTTTTTCAACATACAAAGACTGAGTGAGTTGTATGAAAAGGAAGTACGCTATCTCATGCAAGCACATCAGAAGAATCAGGTAAAGGACTCGATAGATGTTGATGAACCAGAAGAGGTGGGAGATCAATTGACTACTGAAGAGATGGAAGAAAAGGAACACCTGCTAGAACAGGGATTTTCATCATGGAGCCGGAAAGATTTTAATACCTTCATTAGGGCCTGCGAGAAATATGGTCGAAATGATATTAACAGTATTGCTTCAGAGATGGAAGGAAAAACTGAAGAGGAAGTTGAAAGATATGCTAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATCAAAAACATTGAAAGAGGGGAGGCTAGAATTTCTCGGAAGGACGAGATCATGAAAGCGATCGGAAAGAAATTGGACCGCTACAAGAACCCTTGGCTAGAGTTGAAGGTACAATATGGACAGAACAAAGGGAAGCTATACAATGAAGAATGTGACCGATTCAtgATATGCATGGTGCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCTGCATTTCGAACATCACCCTTGTTTAGATTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTGCAAGGAGGTGCGACACACTCATTCGGTTGGTAGAAAAAGAAAACCAGGAATTTGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAGAGTATGACTCCGACAAAGCGGACTTTGGCAAGACAGACTGAGAGTCCATCTTCTGGAAAGAAACGAAAGCAGTTAACTATGGATGATTATGCTAACTCGGGGAAGAGGAGAAAATAA 3219 0.3986 MAKLSKPQASSDEALSNSSSSSEEEQVNDQINEEEDEEELEAVARAASSDDDDDEVVGDNPPDSDEDIAAEDGDDDEQGGDNEAPEISKREKARLREMQKLKKQKVQEILDAQNAAIEADMNNRGKGRLKYLLQQTELFAHFAKGDPSSSQKKSRGSGRHASKVTEEEEDEEYLKGEEDGVANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDDNKFDFKKIVSDNWIEPPRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNIQRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEVGDQLTTEEMEEKEHLLEQGFSSWSRKDFNTFIRACEKYGRNDINSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEFDERERQARKEKKLAKSMTPTKRTLARQTESPSSGKKRKQLTMDDYANSGKRRK 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03723 1072 CDD SF2_C_SNF 498 623 - -
Tsu08g03723 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 412 IPR027417 -
Tsu08g03723 1072 Pfam HAND 761 842 IPR015194 GO:0003677|GO:0006338|GO:0031491
Tsu08g03723 1072 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 760 850 IPR036306 GO:0003677|GO:0006338|GO:0031491
Tsu08g03723 1072 Gene3D - 936 1039 - -
Tsu08g03723 1072 CDD DEXHc_SMARCA1_SMARCA5 194 414 IPR044754 GO:0005524
Tsu08g03723 1072 SUPERFAMILY Homeodomain-like 903 1025 IPR009057 -
Tsu08g03723 1072 MobiDBLite consensus disorder prediction 9 26 - -
Tsu08g03723 1072 Coils Coil 1009 1032 - -
Tsu08g03723 1072 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 374 IPR014001 -
Tsu08g03723 1072 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1072 - -
Tsu08g03723 1072 SMART ultradead3 193 385 IPR014001 -
Tsu08g03723 1072 Coils Coil 17 41 - -
Tsu08g03723 1072 MobiDBLite consensus disorder prediction 143 177 - -
Tsu08g03723 1072 MobiDBLite consensus disorder prediction 1 96 - -
Tsu08g03723 1072 MobiDBLite consensus disorder prediction 1050 1072 - -
Tsu08g03723 1072 CDD SANT 851 895 IPR001005 -
Tsu08g03723 1072 MobiDBLite consensus disorder prediction 82 96 - -
Tsu08g03723 1072 MobiDBLite consensus disorder prediction 1019 1036 - -
Tsu08g03723 1072 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1072 - -
Tsu08g03723 1072 MobiDBLite consensus disorder prediction 52 81 - -
Tsu08g03723 1072 Gene3D iswi atpase 903 935 - -
Tsu08g03723 1072 Gene3D - 848 902 - -
Tsu08g03723 1072 Gene3D ISWI, HAND domain 749 847 IPR036306 GO:0003677|GO:0006338|GO:0031491
Tsu08g03723 1072 SUPERFAMILY Homeodomain-like 851 901 IPR009057 -
Tsu08g03723 1072 Pfam SLIDE 905 1015 IPR015195 GO:0003677|GO:0005634|GO:0006338
Tsu08g03723 1072 Coils Coil 95 115 - -
Tsu08g03723 1072 Pfam Helicase conserved C-terminal domain 500 612 IPR001650 -
Tsu08g03723 1072 MobiDBLite consensus disorder prediction 27 41 - -
Tsu08g03723 1072 Gene3D - 198 413 IPR038718 -
Tsu08g03723 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 695 IPR027417 -
Tsu08g03723 1072 SMART helicmild6 528 612 IPR001650 -
Tsu08g03723 1072 MobiDBLite consensus disorder prediction 1019 1072 - -
Tsu08g03723 1072 SMART sant 848 897 IPR001005 -
Tsu08g03723 1072 SMART sant 950 1011 IPR001005 -
Tsu08g03723 1072 Gene3D - 418 710 IPR027417 -
Tsu08g03723 1072 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 653 IPR001650 -
Tsu08g03723 1072 Pfam SNF2-related domain 210 477 IPR000330 GO:0005524|GO:0140658
Tsu08g03723 1072 ProSiteProfiles SANT domain profile. 847 899 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03723 Tsu-Chr8 55390363 55398781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03723 218 639 RAD5 or RAD16-like Gene Family AT1G02670 27.129 1.58e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu08g03723 SNF2_N 1.9e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03723 K11654 - gmx:100809750 1909.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03723 08 55390363 55398781 Tsu08g03723 08 55390363 55398781 ECH
Tsu04g04198 04 50285671 50291967 Tsu08g03723 08 55390363 55398781 PCT