Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03720 ATGGAAGGCTCTGTCATTGAACGTCTTGATTTTGGAAAGATGGGTTATGGGTGCAAGCATTACAGAAGAAGATGCAGGATTCGAGCTCCTTGTTGCAATGAGGTTTACTCATGCCGTCATTGTCATAACGAGGCAACgaGTATGCTGAAAAACCCTTTTGATCGTCATGAACTTGTTCGTCAAGATGTTGAACAAGTTGTTTGTGCGGTTTGTGACACAGAACAGCCAgTTGCTCAAGTTTGCACTAACTGTGGTGTTAGAATGGGGGAATATTTCTGTGGAATCTGCAAATTCTTCGATGATGCTGAGGGGAGACAACAGTTTCATTGCGATGATTGTGGGATCTGCAGAGTTGGTGGGAGTGAGAATTATTTCCATTGCCAGAAGTGCGGCTCTTGCTATTCAGTTGCTTTGCGCGATAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCAATTTGTTATGAGTACCTTTTTGACTCGTTGAAAGAGACCACTGTTATGAAATGTGGTCACACAATGCATGGTGAATGCTACCACGAGATGATAAAGCGTGACAAGTACTGTTGTCCCATATGTTCCAAGTCGGTGATTGACATGTCTATGACATGGAAGAGAATCGATGAAGAGGTAGATATGGCTAAATTAAAGCATGCAAATGCGTTCAGttggtttcaattttttattttttatcagtGCTTCAAAAACCAAACTGAACTGTTCAACCGGTTGAAGCTTGAACAATCCTTTATATGCTTCGGTTATTTTGACAATTCGATCACAGTTTCGTTCCGGTTCAAGTGGTTTAAGGCAGTTGAAACATGCCTAGAGGTCTTCCTGGTTAaatgtttggtttggtttttaaaacattag 879 0.3948 MEGSVIERLDFGKMGYGCKHYRRRCRIRAPCCNEVYSCRHCHNEATSMLKNPFDRHELVRQDVEQVVCAVCDTEQPVAQVCTNCGVRMGEYFCGICKFFDDAEGRQQFHCDDCGICRVGGSENYFHCQKCGSCYSVALRDNHLCVENSMRHHCPICYEYLFDSLKETTVMKCGHTMHGECYHEMIKRDKYCCPICSKSVIDMSMTWKRIDEEVDMAKLKHANAFSWFQFFIFYQCFKNQTELFNRLKLEQSFICFGYFDNSITVSFRFKWFKAVETCLEVFLVKCLVWFLKH 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03720 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 215 IPR013083 -
Tsu08g03720 292 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 257 - -
Tsu08g03720 292 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Tsu08g03720 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 257 - -
Tsu08g03720 292 SUPERFAMILY RING/U-box 152 204 - -
Tsu08g03720 292 SMART ring_2 153 195 IPR001841 -
Tsu08g03720 292 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Tsu08g03720 292 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Tsu08g03720 292 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Tsu08g03720 292 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Tsu08g03720 292 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Tsu08g03720 292 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03720 Tsu-Chr8 55344098 55348131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03720 10 210 C2H2 Transcription Factor Family AT3G18290 38.350 3.84e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03720 K10144 - gmx:100812246 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03720 08 55344098 55348131 Tsu08g03720 08 55344098 55348131 ECH