Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03711 ATGGGTTGTGTGTTTGGTAAAGAGTCATCAGTGGAAGAGAGGAGAGAGGAAGTTAGAGAAGAAAAAGTAGATGTGGGTGTGGGTGGTAGTGGTAGAGAGGTTGAGAATGTGAAAGAGGGTGGAGAGGAGAAGAGAATAAGGCATAGTGGGGAGAGAAGAAGACGATCTTCGAAGCCGAATCCGAGGTTGAGTAATCCATCTAACAATGTTCATGGTGAACAGGTTGCAGCTGGTTGGCCCTCTTGGTTATCTAAGGTTGCTGGTGAAGCTATCAATGGATTGGTTCCTAGAAGAGCTGATACTTTTGAGAAACTTGATAAGATTGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATACTTTAACAGGGAAGATTGTTGCCCTAAAGAAGGTCCGTTTCGACAATTTAGAGCCAGAGAGTGTGAAGTTTATGGCAAGAGAGATTCTGATTCTTCGTCGTTTGGATCATCCCAATGTTGTCAAATTGGAAGGCTTAGTGACTTCAAGAATGTCATGCAGTTTATATCTTGTGTTTGAATACATGGCACATGATCTGGCTGGACTTGCTACAAATCCCGCGATTAAGTTCACAGAACCTCAGGTAAAATGTTACATGCATCAGCTATTTTCTGGGCTGGAACATTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGCTCAAACCTTCTTATCGACAATGATGGAATTCTCAAGATTGCTGATTTTGGACTAGCTTCCTTCTATGATCCTGATCACAAGCACCCGATGACAAGTAGGGTGGTGACATTATGGTATCGACCTCCAGAACTTCTTCTTGGAGCCACTGAATATAGTGTTGGCGTGGACCTATGGAGTGCTGGCTGCATTCTTGCAGAATTATTGGCTGGAAAACCCATCATGCCTGGTCGAACAGAGGTGGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCTCCATCTGAAGAATATTGGAAAAAGTCAAAGTTGCCACATGCTACCATTTTTAAGCCTCAACAATCATACAAGAGATGCATAGCGGAGACTTTTAAGAATTTTCCACCATCATCCCTGCCACTGATTGAAACCCTTCTCACAATTGATCCTGATGAACGTCTGACTGCCACCGCTGCGTTGCATAGTGAATTCTTTACTACAAAACCTTATGCTTGTGATCCCTCTAGTCTTCCTAAATATCCTCCCAGCAAAGAGATGGATGCAAAGCTACGGGACGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAGAGCAAATGTTGATGGTGTGAAGAAATCTCGTCCACGTGAGCGAGTAGGAAGGGGACTTCCCATTCCAGATGCCAATGCTGAACTGCAAGCAAATATTGATAGACGGCGATTGATCACACACGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCACACCAAGATGGAGCTCTAGGCTATCCTTTGGGTTCTTCACAACACATGGATCCAATTTTCGATCCTCCCGACATTCCATTTAGTTCAACAAACTTGTcacaaccaaaatcaaatatcCATACTTGGTCTGGTCCATTGGTCGATCCCGGTAGCGTTGGTGCACCGAGGAGAAAGAAGAAACATGGAAGGTGA 1623 0.4362 MGCVFGKESSVEERREEVREEKVDVGVGGSGREVENVKEGGEEKRIRHSGERRRRSSKPNPRLSNPSNNVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMAHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASFYDPDHKHPMTSRVVTLWYRPPELLLGATEYSVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIAETFKNFPPSSLPLIETLLTIDPDERLTATAALHSEFFTTKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGRANVDGVKKSRPRERVGRGLPIPDANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSQHMDPIFDPPDIPFSSTNLSQPKSNIHTWSGPLVDPGSVGAPRRKKKHGR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03711 540 Pfam Protein kinase domain 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03711 540 CDD STKc_CDK9_like 102 386 - -
Tsu08g03711 540 Gene3D Phosphorylase Kinase; domain 1 90 184 - -
Tsu08g03711 540 ProSiteProfiles Protein kinase domain profile. 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03711 540 PANTHER CELL DIVISION PROTEIN KINASE 1 539 - -
Tsu08g03711 540 MobiDBLite consensus disorder prediction 503 518 - -
Tsu08g03711 540 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Tsu08g03711 540 SUPERFAMILY Protein kinase-like (PK-like) 97 392 IPR011009 -
Tsu08g03711 540 MobiDBLite consensus disorder prediction 466 540 - -
Tsu08g03711 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Tsu08g03711 540 Gene3D Transferase(Phosphotransferase) domain 1 185 425 - -
Tsu08g03711 540 MobiDBLite consensus disorder prediction 1 71 - -
Tsu08g03711 540 SMART serkin_6 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03711 540 PANTHER CYCLIN-DEPENDENT KINASE 1 539 - -
Tsu08g03711 540 MobiDBLite consensus disorder prediction 423 446 - -
Tsu08g03711 540 MobiDBLite consensus disorder prediction 423 441 - -
Tsu08g03711 540 MobiDBLite consensus disorder prediction 35 49 - -
Tsu08g03711 540 MobiDBLite consensus disorder prediction 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03711 Tsu-Chr8 55254904 55259494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03711 97 424 Core Cell Cycle Gene Families AT5G10270 52.035 2.32e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu08g03711 Pkinase 2.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03711 K08819 - gmx:100779413 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03711 08 55254904 55259494 Tsu08g03711 08 55254904 55259494 ECH
Tsu04g04192 04 50240653 50243580 Tsu08g03711 08 55254904 55259494 PCT