Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03709 ATGGCTATAATCAGGAATATATTTGAAGATATGAGATCGAGATCTCAAAGGGCAGTTGCGgttgaaaaagaagagaaagtagCTGTTGGTGATGGTTTAAGACAGAGTTGTTGGGCTAACATGCCACAAGAACTTCTTCGTGAGGTTCTTGTCAGAATTGAAGCTTCTGAGGACACGTGGCCACCTAGGAAAAACGTTGTTGCATGTGCTGGAGTGTGTCGGAACTGGAGAGTCATCACCAAAGAAATTGTTATAAAACCTGAAATTTCTGCTAAGATTACTTTCCCCATTTCTGTTAAACagCCTGGTCCAAGGGAGAATCTCCTTCAATGCTTTATAAAGCGCAACCGGTCCACCCAAACCTATTATTTGTATCTTAGTTTAACTGGTTCGCTATGTGATGATGGGAAGTTCCTTCTAGCTGCACGCAAATGCAGACGTCCTACCTGCACTGACTATATCATCTCTCTAGATGGATATGATATGTCAAGAGGAAGCAATTCTTATGTCGGGAAACTGAGATCAAATTTCCTCGGAACAAAGTTCACAGTCTATGATGGTCAGCCACCTCATACTGGAGCAAAGATAGCAAAAAGTCACTCCACTAGGTTGGTGAATCTAAAGCAGGTTTCACCCAAGGTCCCAACAGGAAACTATCCAGTTGCTCACATCTCATATGAATTGAATGTTCTAGGCTCTAGGGGCCCTAGGAGAATGCACTGTGTCATGGATTCCATTCCTTCCTCTTCAATCGAACCAGGAGGGGTAGCTCCTACACAAACTGAGTTTTCTGTAAACAACATAGAAATGTTTCCCTTGTTTCCATTTTTCCGATCAAAATCAAGTCGTGTGGTGGAGAACTCTCTATCCGGACCGCTGGTTGGTGATAAAAAAGAGGGCATGCTTGTGTTGAAAAACAAGTCTCCAAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGAGTGACGGTTGCCTCAGTTAAAAACTTTCAGCTGGTTGCTTCTGCAGAAAATGGAACTGCTGGACCGGAACATGATAAGATTATCCTGCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTATCGATACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATAA 1179 0.4224 MAIIRNIFEDMRSRSQRAVAVEKEEKVAVGDGLRQSCWANMPQELLREVLVRIEASEDTWPPRKNVVACAGVCRNWRVITKEIVIKPEISAKITFPISVKQPGPRENLLQCFIKRNRSTQTYYLYLSLTGSLCDDGKFLLAARKCRRPTCTDYIISLDGYDMSRGSNSYVGKLRSNFLGTKFTVYDGQPPHTGAKIAKSHSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSVNNIEMFPLFPFFRSKSSRVVENSLSGPLVGDKKEGMLVLKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASAENGTAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03709 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Tsu08g03709 392 Gene3D Tubby Protein; Chain A 95 392 IPR025659 -
Tsu08g03709 392 Pfam Tub family 99 387 IPR000007 -
Tsu08g03709 392 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Tsu08g03709 392 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Tsu08g03709 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Tsu08g03709 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Tsu08g03709 392 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Tsu08g03709 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Tsu08g03709 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Tsu08g03709 392 PANTHER TUBBY-RELATED 4 392 - -
Tsu08g03709 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 392 - -
Tsu08g03709 392 SUPERFAMILY Tubby C-terminal domain-like 87 392 IPR025659 -
Tsu08g03709 392 Pfam F-box domain 38 87 IPR001810 GO:0005515
Tsu08g03709 392 SUPERFAMILY F-box domain 32 81 IPR036047 GO:0005515
Tsu08g03709 392 ProSitePatterns Tub family signature 1. 322 335 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03709 Tsu-Chr8 55234831 55239720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03709 12 392 TUB Transcription Factor Family AT2G47900 72.324 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu08g03709 Tub 2e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03709 K19600 - gmx:100778346 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03709 08 55234831 55239720 Tsu08g03709 08 55234831 55239720 ECH