Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03702 ATGACAATGCAAGAACATCATCAACCACTATCAACTCATGAAACTCTCAAGATTTCCAACCAGACTGAGACCGGGCTAAACAAAGGAATTTCAGATGATGGATCCAGCGGGAAGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGCAGCACAGCTGGTGGAAGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATATCATCACCAAAAGACTTTTTGCGGGTTTTGAGcttcaaaagaaaattgaatGTAGCAGATGGTGAAAGAAGCAGCCTCCTTAATTCAGACTCTAAGACAGATGCAGACAGTACTAATATGGCCCGCATATCTGAAATTTCATGGTCAAGATGTAATTCTCTTCCTGTTTCACATGCACCAAATCTGTCCCCTTCAGTTGCTACACCCGTGTCTGCAAGGACATATAATGAACAACAGATTAAGCCACATAAAGATGCTAAATCTAAGGTTTCAAGGTGCCTAACAATACCTGCACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTAACACCCGCACTGACCAAGAACAACAAGATACAAATGATGATCAAATAACTCCTGTTCCGGTAGAAGTTACTGAGGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTTGATGTGTGCGATGAAAGAAATACCTTTAAAATGGAATGCAATTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCACCACAAAAGGAACCAAGAAATGTGAAATATGCGGGAAAGAGGTTCAGAATTTACCTGTAACCTTGCTCCGCATAACCAGCACTGTTCAACAAAGAATCGGACAGAATCAGCACAACTTAAGTTCAGAAGCAATAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACGATATGCTATTTTTTCTTCCTCGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCTATCATTATATCAGCACCATTTTCCTTTACTTTGGGCCTCCTGGCATCTGTTTTTGCAATTGTCCTTGCAATTAGAGAGTATATATGGACATATGCCGCTCTCGAGTTTGCACTTGTGGCTATAACTGTGCATCTCTTTTATACTTTGTTGCATTTGGCGCCCATTTATTCGATACTACTTTCATCGATTTTGGGTTTTGGAATTGCTATGGGAATGAACTATCTGTATATCCAGTATGTGACATGGAGACTTCAGGTCTCTATTAATGATAGCCCAGTATGA 1272 0.4033 MTMQEHHQPLSTHETLKISNQTETGLNKGISDDGSSGKRPDISLQVPPRPLGFGSTAGGRVLDHSQSFSKGISSPKDFLRVLSFKRKLNVADGERSSLLNSDSKTDADSTNMARISEISWSRCNSLPVSHAPNLSPSVATPVSARTYNEQQIKPHKDAKSKVSRCLTIPARNVVIVRSVSFNTRTDQEQQDTNDDQITPVPVEVTEDEEIPEEEAVCRICLDVCDERNTFKMECNCKGDLRLVHEECLIKWFTTKGTKKCEICGKEVQNLPVTLLRITSTVQQRIGQNQHNLSSEAISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIISAPFSFTLGLLASVFAIVLAIREYIWTYAALEFALVAITVHLFYTLLHLAPIYSILLSSILGFGIAMGMNYLYIQYVTWRLQVSINDSPV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03702 423 SMART ringv_2 216 264 IPR011016 GO:0008270
Tsu08g03702 423 Pfam RING-variant domain 217 263 IPR011016 GO:0008270
Tsu08g03702 423 ProSiteProfiles Zinc finger RING-CH-type profile. 209 270 IPR011016 GO:0008270
Tsu08g03702 423 PANTHER ZINC FINGER PROTEIN 3 423 - -
Tsu08g03702 423 MobiDBLite consensus disorder prediction 1 31 - -
Tsu08g03702 423 MobiDBLite consensus disorder prediction 1 58 - -
Tsu08g03702 423 CDD RING_CH-C4HC3_MARCH 217 264 - -
Tsu08g03702 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 271 IPR013083 -
Tsu08g03702 423 PANTHER OS02G0165000 PROTEIN 3 423 - -
Tsu08g03702 423 SUPERFAMILY RING/U-box 213 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03702 Tsu-Chr8 55191089 55195619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03702 203 322 C3H Transcription Factor Family AT2G37950 29.231 3.45e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03702 - - gmx:100527094 623.624