Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03686 ATGGATTCTCAATCCCAATCTCAATCCCAATCAATTCTCCCTCCGATGGAACCTCCCGAAGATCTCTCCTCTGTTTGGGACCTCTCTTATCTCCTCGACTTCAATCTCGACGACGAAATTCCACAACTCCCTCCTCTTCTTccaaaccctaaccctaatccTAACGATAacgataataataatgataagatCCGAAAACGTGACCCGAGATTAACTTGTTCCAACTTTCTCGCGGGTCATGTACCATGTGCTTGTCCTGAACTCGATGCTTTGCTTGAAGATAAAGGTTTACCTGGAAAGAAACGCGCTCGTACAGCGCGTGCATCTACATCGGCACGGTGTCAAGTTCCTGGTTGTGAAGTTGATATCTCTGAACTTAAAGGCTATCACCGACGACATAGGGTTTGTTTACGATGTGCTAATGCTGTTACTGTTGTTCTTGATGGCGAAACCAAAAGATACTGTCAACAGTGTGGAAAGTTTCATGTTTTATCGGATTTCGATGAAGGGAAACGGAGTTGTAGACGAAAATTGGAGCGTCATAATAATAGGAGGAGGAGAAAGCCTGCTGATTCTGTATCTGGAGTTGATAATGAACTTCAAACTGTTACTCAAAATGATGATTCCAATTGTGATGGAGAAGCAGGAATAGATTATTCAAATTTGAGTAGTGAGAATATTGAAAAAAGAGTGTTGCCTGATCATGAAGAAGAACCGATTGCTACTGGGTCCTCAACTCCAGAGACCCAGAATATTAATGGTGATGGTGTTGTGTCCATTGTTGCTTCTGCTGAAGCACAAGTGAATATTGGAAAAGATGTTTCCAATCTTTCCAAGTCACCTTCATCTTGTGACAATAAGAGCGATTATTCGTCTATGTGCCAAACAGGCCGGGTTTCTTTTAAGCTTTACGATTGGAATCCTGCGGAATTTCCTAGAAGGCTGcggcttcaaATATTCCAATGGTTGGCAAGTATGCCTGTGGAGCTGGAGGGATATATCCGCCCTGGGTGTACAATCCTTACAATTTTTATTGCAATGCCAAATGTTATGTGGATCAATTTACTCAAAGATCCTATGTATTATGTGCGTGAACTTGTTGCTCCTAGAAAGTTGCTATCTGGAAGAGGCACCGCTCTAATTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAAGTTCTGTGATGAAAGTCGAGGTAAACGAGCAGGCACCTAAGCTTCACTATATTCATCCCACATGCTTTGAAGCAGGAAAACCCATGGAGTTTTTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTATGGGAAGTATATGAAGTATGAGTATTGCGTTCCGTCTCCGCATAACTGGGCCGAAGACAATATTTCTTGTGCTTACGATAATCAGTTATATAAGATATGTGTCCCTCATATTGAGGAAAATCTCATGGGGCCTGCATTTATTGAGGTTGAGAATGAGTCTGGTTTATCAAACTTCATTCCCGTACTTATTGCAGATAAAGAAGTTTGCACTGAAATGAAGATATTGCAACCGAAACTTGATGCCTCTCACCGTTCTAAACAATTTCGGTCTGCATCTGGTGGTTCTGTTTGTAGCTCATGTGAAGCTTTTGTACAAATTCACACATCGTCATCAGACTTGCTTGTAGATATAGCATGGTTACTTAAGGACCCTACTTCAGAAAATTTTGACAGAATAATATCTGCTTCACAGATTCAAAGATATTGCTATTTGTTGGATTTTCTAATAAGCAATGATTCAACCATCATTTTGGGAAAAATATTGCcaaatttgacaattttaaCAGAAAGCATGAAATCCAATATAAGTGATGTTGACATGTTCCAATTACTGAAGTGCATGCAAAATGCCAAAGATGCTATTTGTCAGAAAGGTCGAGGTTTAGTTTTGCACTCCAAAATGGATGACTTTAAACCTGGTCAATGCTGTTCCCAAGATGATAAGTTATCGGTTGTTGAAATTAATACTCAGGGTATCCAGTTTAGTGCAGATGCAGAGTTGGGAATTTTGAGAAGTCTCGCGTCTGATGATAAAAGTCAGAAGATACCGCTTTTGAAAAGggatattataatgaatatggAAGAGTTTCCCAAAAGATGTGAACGTCGAAATCTTACCAGGGGATTCTTGAGCTCTCGGCCAACTATTTTTGTCCTTGTTTCAGTTGTTGTTTGTCTTATGGTATGTGTATCCATATTTCATCATGGGAGGGTTAACGAGTTAGCAGTATCCATTAGAAGGTGTTTGTTTAACCATTaa 2310 0.3879 MDSQSQSQSQSILPPMEPPEDLSSVWDLSYLLDFNLDDEIPQLPPLLPNPNPNPNDNDNNNDKIRKRDPRLTCSNFLAGHVPCACPELDALLEDKGLPGKKRARTARASTSARCQVPGCEVDISELKGYHRRHRVCLRCANAVTVVLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPADSVSGVDNELQTVTQNDDSNCDGEAGIDYSNLSSENIEKRVLPDHEEEPIATGSSTPETQNINGDGVVSIVASAEAQVNIGKDVSNLSKSPSSCDNKSDYSSMCQTGRVSFKLYDWNPAEFPRRLRLQIFQWLASMPVELEGYIRPGCTILTIFIAMPNVMWINLLKDPMYYVRELVAPRKLLSGRGTALIHLNDMIFRVMKDGSSVMKVEVNEQAPKLHYIHPTCFEAGKPMEFFACGSNLLQPKFRLLVSFYGKYMKYEYCVPSPHNWAEDNISCAYDNQLYKICVPHIEENLMGPAFIEVENESGLSNFIPVLIADKEVCTEMKILQPKLDASHRSKQFRSASGGSVCSSCEAFVQIHTSSSDLLVDIAWLLKDPTSENFDRIISASQIQRYCYLLDFLISNDSTIILGKILPNLTILTESMKSNISDVDMFQLLKCMQNAKDAICQKGRGLVLHSKMDDFKPGQCCSQDDKLSVVEINTQGIQFSADAELGILRSLASDDKSQKIPLLKRDIIMNMEEFPKRCERRNLTRGFLSSRPTIFVLVSVVVCLMVCVSIFHHGRVNELAVSIRRCLFNH 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03686 769 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 767 IPR044817 GO:0003677
Tsu08g03686 769 MobiDBLite consensus disorder prediction 1 20 - -
Tsu08g03686 769 ProSiteProfiles Zinc finger SBP-type profile. 111 188 IPR004333 GO:0003677
Tsu08g03686 769 SUPERFAMILY SBT domain 112 192 IPR036893 GO:0003677|GO:0005634
Tsu08g03686 769 Gene3D - 105 175 IPR036893 GO:0003677|GO:0005634
Tsu08g03686 769 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 20 767 - -
Tsu08g03686 769 MobiDBLite consensus disorder prediction 41 66 - -
Tsu08g03686 769 MobiDBLite consensus disorder prediction 178 198 - -
Tsu08g03686 769 Pfam SBP domain 114 188 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03686 Tsu-Chr8 54956952 54963123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03686 12 763 SBP-box Gene Family AT5G18830 45.707 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu08g03686 SBP 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03686 - - lja:Lj6g3v1916050.1 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03686 08 54956952 54963123 Tsu08g03686 08 54956952 54963123 ECH