Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03679 ATGAGTGATGCAGCACGAGAACTACCACAACAACCATCACCATCACAGTCTTCTTCCTCAAAGTCTTCTTCCTCAAGCAatgacaaaaaacaaataaatagaattaCTTCAAGAGCCAGACGACCACGACCTGGGTTTTCTGATTCTTTTTCTACCATCGAGTTTGCAAATTTAGAGATAGAAGAAGGAAACCAGCCTGATCAGTATTCTCCAAGAAGTCAAGAATCTGATTCACCAACTTCAAGAGCAAGCACTTCTGATTCTGAGGGATGTCCAAGAGGAAATAATCAGTGGCGCGGTTTCTTTAAATTACTGAAGAAAGGACCGGAAAAGCCTTTTCCAACCTTTCATCCATTGAAAAATGTTCCAAAACTTACtagaagaaaaagcaaaagaattAGGGAGGATCTTATTCCTTCTCTCAATTCTCCAGCTCTTCAGTCTTCTTTTGACGCGGAGTTTTACTGCTTCAAATCTTCGTGGAAGAATTTCACTATCGCAGAAATCCAAGCTGCAACCAATAACTTTAGCCATGataatttGCTTGGTGAGGGAGGCTATGCTGAGGTTTACTTAGGTAAATTGGAAGATGGAAACTTTGTTGCCATTAAAAAGTTGACAAAAGGTAGCCAAGAAGAAATGACTGCAGATTTTTTGTCTGAGCTTGGCATTATAGTGCATGTGGATCACCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAATTGTCTCCTCATGGAAGCTTGTCATCCTTACTTTATGGACCTAGAGAGAAATTGAATTGGAGCCTTAGATATAAGATTGTTTTGGGGACTGCTGAGGGTCTTCGCTATCTGCACGAGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAGGCTTCTAATATTCTGCTCTCGGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGATCAATGGACTCACCATACTGTCTCCAAAGTGGAAGGCACATTTGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGTTTTTGCTTATGGTGTACTATTATTGGAGCTTATTACTGGAAGACAAGCTATAGATAGTTCACAAAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTATCTAGTAATAACATCAAAGAGCTAGTTGATCCAATTTTGCAAAGTGCTTATGATGAAGAACAGATGAAACTTGTAATCTTAACAGCTTCTATGTGTATAGACCAGACCTCGATACAACGACAACATGTGGATAATTTTTGTATCGAGATGGATTTTCCACCCATGGCTTATCAGCCTTACCATCATCAGGAGTTGACTGAAGGAAGGTTTACTGCGCAATATATAGCAATGGGCTTAGATCAGAGACACACTTGTTTTAAGTGTAACATAGGAAATGCTGTTGTTCCTCATCAAATCTTACCAGAGGCGCAATGTATCTGGTGTTTATTGGATACGTGCAAGTCTGCTATCACGCTTCATCAGGAGAATGAAGATCTACTCCATCAAAGAGATGGATTCATCAATTGGATTAACCAAAACAACCCAAGATTGGTGAGCAAATTTAAAACACAAAGATGTAGATTTGATCCAAATTGTGATGATGGCTTGCTTTGCATCTATCATCATGAAGGAGAAGATTGGTTTGACTACCAAGCTATTCTTCAACCCAGTAGCATTGTGGGTTGCACTGCTACCCAAGAGGCTCCTCAGTTGACATgTATATTTTCATGGCAATATCAGTCGTTTGCTCAACTTCAATACCAGGATTGCTTGAAATGCAATTATGTTGATATGGGTTTGTCTGGCAGAGTGATACCTAACATTGTATTCGTTTGA 1878 0.3892 MSDAARELPQQPSPSQSSSSKSSSSSNDKKQINRITSRARRPRPGFSDSFSTIEFANLEIEEGNQPDQYSPRSQESDSPTSRASTSDSEGCPRGNNQWRGFFKLLKKGPEKPFPTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDAEFYCFKSSWKNFTIAEIQAATNNFSHDNLLGEGGYAEVYLGKLEDGNFVAIKKLTKGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSLLYGPREKLNWSLRYKIVLGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDVFAYGVLLLELITGRQAIDSSQKSLVMWAKPLLSSNNIKELVDPILQSAYDEEQMKLVILTASMCIDQTSIQRQHVDNFCIEMDFPPMAYQPYHHQELTEGRFTAQYIAMGLDQRHTCFKCNIGNAVVPHQILPEAQCIWCLLDTCKSAITLHQENEDLLHQRDGFINWINQNNPRLVSKFKTQRCRFDPNCDDGLLCIYHHEGEDWFDYQAILQPSSIVGCTATQEAPQLTCIFSWQYQSFAQLQYQDCLKCNYVDMGLSGRVIPNIVFV 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03679 625 MobiDBLite consensus disorder prediction 63 93 - -
Tsu08g03679 625 Gene3D Phosphorylase Kinase; domain 1 148 250 - -
Tsu08g03679 625 MobiDBLite consensus disorder prediction 1 95 - -
Tsu08g03679 625 MobiDBLite consensus disorder prediction 1 32 - -
Tsu08g03679 625 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 40 431 - -
Tsu08g03679 625 PANTHER OS08G0249100 PROTEIN 40 431 - -
Tsu08g03679 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Tsu08g03679 625 ProSiteProfiles Protein kinase domain profile. 176 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03679 625 Pfam Protein kinase domain 178 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03679 625 SUPERFAMILY Protein kinase-like (PK-like) 157 414 IPR011009 -
Tsu08g03679 625 ProSitePatterns Protein kinases ATP-binding region signature. 182 205 IPR017441 GO:0005524
Tsu08g03679 625 SMART serkin_6 176 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03679 625 Gene3D Transferase(Phosphotransferase) domain 1 253 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03679 Tsu-Chr8 54843566 54870363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03679 147 427 Receptor kinase-like Gene Family AT1G53420 40.273 3.45e-62 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu08g03679 Pkinase 3.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03679 - - gmx:102670300 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03679 08 54843566 54870363 Tsu08g03679 08 54843566 54870363 ECH
Tsu08g03679 08 54843566 54870363 Tsu01g03437 01 42396230 42398770 ECH
Tsu08g03679 08 54843566 54870363 Tsu07g04516 07 50066646 50070017 ECH
Tsu08g03679 08 54843566 54870363 Tsu01g03861 01 46400681 46403464 ECH