Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03674 ATGGCATCACTTGTTGCCAGTGGTAACAGTCAAATGTCTTCTGTCCAAGAAAAAGGAAGTAGGAATAAGAGAAAATTCAGGGCTGATCCACCCTCAGGGGAGCCAAATAAGATTATATCTTCACCTCAACATGAGAGCCTAAGTTATGAATTTGCTGCTGAAAAAATCGAAATAACCCCAACTTTTGGGCGAGTAACAGCTTCTGACTTGTGCAGTGTTAGCCATGATTGTTCTGATGGTTTGAAGCTTGATCTTGGATTATCTAGCCCTGTTGTTTCACCTGAGGTTAGGCTTAGCCATCCTAAGGAGGAACTAGAGGTGGTTGAATCTCATGGTGCTGATTGGAGTGATCACACAGAAACTCAATTGGAAGAACTTGTATTGAGCAATTTGCAAACCATTTTCAAGAGTGcaataaaaaaagttgttgCTTGTGGCTACACTGAAGATGTTGCTACAAAGGCTATGTTAAGGCCTGGCGTCTGTTATGGATGCAAAGACACTGTGTCTAATATAGTTGAGAACACTTTAGCTTTTCTAAGAAACGGCCAAGAGTTTGATCCTTCACGAGAGcactattttgaaaatttagtgCAGCTTCAGAAGTATATCTTGGCTGAATTGGTTTGTGTTCTTCGAGAGGTTAGGCCATTTTTCAGTGTTGGGGATGCAATGTGGTGTTTGTTAATTTGTGACATGAATGTGTCACACGCTTGTGCAATGGATGGTGATCCCTTTAGCAGTTTATGCAATGATGGAAATGGTGATGGCTGTTCTGTCCAGACTGAATCACAATCAAAAGTTGAAACAAAAAGTGCCGAGTTGAGTCTTCCAAGTCCTTGTAATTCAATTCCGTCAGTTTCTCAATCTGAGAAATCCATTGTGGCGGAAAATTCTCAAACTGTCGGTGGACTCTTAGAGAAACAGGGTGCTAATTCTGCTGACAAGTCATCTAATGCTTCTGGAACCCCTCATTCTCCCTTGCTACATGAAAAGTGTGGGAGTGTTAGGAAGGTCCATCCTAGTAGCACCAAGAGGGACTACATTTTTCGTCAGAAGTCAATCCACGTGGAAAAAAATTATCGGACATACGGGTCTAAAGGCTCTTCAAGAGGAGGAAAGCTGAGTGGCCTGAGTGGTTTAATCTTGGATAAAAAACTTAAATCTGTATCAGAGTCTACCACCATAAACTTAAAGAGTGCATCCATAAACATAAGCAAGGCGGTGGGAATTAATGTCACTCAAGACAATCTCAACACGGATTTATCATCGAATGATGGACCATCTACCCCTACTTCATTTAGCCTGGATCCTAGTGGTGCTATCTCTCGTGCATCAGATCCTTCATCTTCAGAACATGGAGCAAATCCTATACCTGCAGTCAGTATCCCCCCAGATGCATTACCAGCTACAGATACTGATCTTTCTCTTTCGCTGTCTTCAAAAAGTAATTCTACAACACCTATATGCTGCGGTCACAAGGTACCTATTAGTAGCTGTGTGGGGATACCATATGACAAGTCCATGGGACAATGGTTGCCCCAAGATAGAAAGgatgaactgattttaaagATGGTTCCGAGGGTTCGGGAGCTGCAAAACGAGCTTCAAGAATGGACAGAGTGGGCAAATCAAAAGGTGATGCAGGCTGCTCGTCGGTTGAGTAAGGACAAGGCTGAGCTTAAGACACTTAaacaagagaaagaagaagttGAACGTCTTAAAAAGGAGAAACAATGTCTAGAAGAAAACACAATGAAAAAGCTTTTTGAGATGGAAAATGCCTTGGGTAAAGCAGGTGGACAGGTGGAACGAGCTAATACTGCAGTACGGAAGCTCGAGATGGAGAATGCTGCATTGAGGAAAGAGATGGAGGCTGCTAAGTTACGTGCGGCAGAATCAGCAACAAACTTTCAAGAGGCCTCTAAAAGGGAAAAGAAGACCCAAATGAAGTTTCACTCATGGGAGAATCAGAAATCGCAGTTACAGGAAGAGCTAAATACTGAAAAAAGCAAATTAGCACAGATATTGAAGGAATCAAAACAAGCCGAAATGCAAGCGGAGAAATTTGAGGCTAAACGGCGGCAGGCAGCAAAGAAAACTGAAGAGCTTCTCTTGCTGGCCAgttctataaaaaaagaaagagaacaaATTGAGGAGACAGCCAGAGCCAAGGAGGAGACGATCAAATTAGAAGCAGAGATGGAACTGCAAAGATATAAAGATGACATCCagaaaattgaaaaggaaattGCACAAATAAGACAGAAGTCCGACTCTTCAAAAATCGCCGCATTAAAGCGAGGAATAGATGGAAGCTATGCCGGTAGATGCAAGGACATGAGAAATGGTTCTGCTCTCGAAGAACCGCAGACCGCGTCCATTTCAGAACTGGTTCAGAAGTTAAATAACTTCTCGATGAAAGGAGGAGGTGTGAAACGTGAAAGGGAGTGCGTGATGTGCCTTTCGGAGGAGATGTCCGTTGTATTCCTTCCATGTGCTCATCAGGTTGTTTGCACAAAGTGCAACGAGCTCCATGAGAAGCAGGGAATGCAAGAATGCCCTTCTTGCAGGAGCCCCATCCAGGAGCGTATTTCTGTGCGTTATGCGCGTACataa 2619 0.4173 MASLVASGNSQMSSVQEKGSRNKRKFRADPPSGEPNKIISSPQHESLSYEFAAEKIEITPTFGRVTASDLCSVSHDCSDGLKLDLGLSSPVVSPEVRLSHPKEELEVVESHGADWSDHTETQLEELVLSNLQTIFKSAIKKVVACGYTEDVATKAMLRPGVCYGCKDTVSNIVENTLAFLRNGQEFDPSREHYFENLVQLQKYILAELVCVLREVRPFFSVGDAMWCLLICDMNVSHACAMDGDPFSSLCNDGNGDGCSVQTESQSKVETKSAELSLPSPCNSIPSVSQSEKSIVAENSQTVGGLLEKQGANSADKSSNASGTPHSPLLHEKCGSVRKVHPSSTKRDYIFRQKSIHVEKNYRTYGSKGSSRGGKLSGLSGLILDKKLKSVSESTTINLKSASINISKAVGINVTQDNLNTDLSSNDGPSTPTSFSLDPSGAISRASDPSSSEHGANPIPAVSIPPDALPATDTDLSLSLSSKSNSTTPICCGHKVPISSCVGIPYDKSMGQWLPQDRKDELILKMVPRVRELQNELQEWTEWANQKVMQAARRLSKDKAELKTLKQEKEEVERLKKEKQCLEENTMKKLFEMENALGKAGGQVERANTAVRKLEMENAALRKEMEAAKLRAAESATNFQEASKREKKTQMKFHSWENQKSQLQEELNTEKSKLAQILKESKQAEMQAEKFEAKRRQAAKKTEELLLLASSIKKEREQIEETARAKEETIKLEAEMELQRYKDDIQKIEKEIAQIRQKSDSSKIAALKRGIDGSYAGRCKDMRNGSALEEPQTASISELVQKLNNFSMKGGGVKRERECVMCLSEEMSVVFLPCAHQVVCTKCNELHEKQGMQECPSCRSPIQERISVRYART 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03674 872 Coils Coil 645 700 - -
Tsu08g03674 872 Coils Coil 547 584 - -
Tsu08g03674 872 Pfam Family of unknown function (DUF6592) 130 241 IPR046527 -
Tsu08g03674 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 796 868 IPR013083 -
Tsu08g03674 872 MobiDBLite consensus disorder prediction 420 479 - -
Tsu08g03674 872 MobiDBLite consensus disorder prediction 309 325 - -
Tsu08g03674 872 PANTHER OS05G0141500 PROTEIN 9 871 IPR046934 -
Tsu08g03674 872 MobiDBLite consensus disorder prediction 1 43 - -
Tsu08g03674 872 MobiDBLite consensus disorder prediction 635 655 - -
Tsu08g03674 872 Pfam Zinc finger, C3HC4 type (RING finger) 815 863 - -
Tsu08g03674 872 Coils Coil 603 637 - -
Tsu08g03674 872 MobiDBLite consensus disorder prediction 309 331 - -
Tsu08g03674 872 ProSiteProfiles Zinc finger RING-type profile. 818 858 IPR001841 -
Tsu08g03674 872 SUPERFAMILY RING/U-box 799 865 - -
Tsu08g03674 872 Coils Coil 708 764 - -
Tsu08g03674 872 MobiDBLite consensus disorder prediction 1 17 - -
Tsu08g03674 872 MobiDBLite consensus disorder prediction 420 456 - -
Tsu08g03674 872 MobiDBLite consensus disorder prediction 639 653 - -
Tsu08g03674 872 PANTHER OS05G0141500 PROTEIN 9 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03674 Tsu-Chr8 54785697 54790011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03674 818 867 C3H Transcription Factor Family AT1G73950 42.000 7.74e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03674 - - gmx:100777140 1188.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03674 08 54785697 54790011 Tsu08g03674 08 54785697 54790011 ECH