Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03669 ATGGGTTGTGTTCATGGAAAGTGTTGTAGTCGTTATCCTGCACCATCAATTGGTGGTTCTAGGGATTATAGAGAACTTGGTCCTTATAGTGCACAGAGGAAGCATATACTCACACAAAGATCATTGCATTTTGTTGATGTTCCTTCTCATAACTTCAATATGGAATACTCTGTTCTTACTCAGAGAGGTTACTACCCTGACTCACCTGATAAAGAAAATCAAGATTGTTACTGTGTTAGGACAATATTGCAAGGTAATCCAAGTGTTCATTTCTTTGGTGTTTATGATGGACATGGTGAATTTGGTGGAAGGTGTTCAAATTTTGTTAAGGATAAGTTGGTTGAAAAATTGTCAAATGATTCTGCATTGTTAGAAGATCCTGTTAAGGCTTATAATTCGGCATTTTTAGCTACAAATGAGGAATTGCATAAGAATGAGATTGATGATTGTATGAGTGGTACTACCGCGATTACGGTGTTGGTGATAGGGGATACACTTTATGTTGCGAATGTTGGTGATTCGAGGGCGGTGTTGGCTGTTAAGGATGGGAATAGAATTGTTGCTGAGGATTTGTCTTCTGATCAGACACCTTTTAGGAGAGATGAATATGAGAGAGTGAAGCTTTGTGGTGCTAGGGTGTTGAGTGTTGATCAGGTTGAAGGGCATAAGGATCCGGATATTCAGACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCGCGATTGTGGGTTCAGAATGGGATGATTCCTGGAGCTGCTTTTACAAGGAGTGTAGGGGATAGTTTAGCTGAGACTATTGGTGTTATTGCGGTTCCGGAGGTTTTAACCGTTAAGCTTACACCAAATCATCTTTTCTTTGTTGTTGCGAGTGATGGCGTATTTGAGTTCCTATCAAGCCAAACTGTTGTTGATATGGCTTCAAGTTATGCAGATCCCCGTGATGCATGTGCTGCCATTGCTGGAGAATCTTACAAATTATGGTTGGAACACGAGGGTCGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGCCTGTCTAATTCAGGTGCATCTGAATACGGATCAGGAGAGATCAACGTCAGTTCTGTAACGAGAGCCAAAAAGGGAAAGGGGACTTCTGGTATATCTGCTCCTACCGGTGGAGATGTTCATCGTGCTGTGAGGAGTGGTTTATCGGATTCAATGTCCTGTCAGCATGTGGTTTCATCGAGAAGCCAGGCCATAGTGGTTCCCTCTCCCACATGTCAAAGTCCACTTCAATTGTGA 1275 0.4204 MGCVHGKCCSRYPAPSIGGSRDYRELGPYSAQRKHILTQRSLHFVDVPSHNFNMEYSVLTQRGYYPDSPDKENQDCYCVRTILQGNPSVHFFGVYDGHGEFGGRCSNFVKDKLVEKLSNDSALLEDPVKAYNSAFLATNEELHKNEIDDCMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMIPGAAFTRSVGDSLAETIGVIAVPEVLTVKLTPNHLFFVVASDGVFEFLSSQTVVDMASSYADPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSGASEYGSGEINVSSVTRAKKGKGTSGISAPTGGDVHRAVRSGLSDSMSCQHVVSSRSQAIVVPSPTCQSPLQL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03669 424 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 32 417 - -
Tsu08g03669 424 Pfam Protein phosphatase 2C 84 320 IPR001932 -
Tsu08g03669 424 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Tsu08g03669 424 CDD PP2Cc 71 345 IPR001932 -
Tsu08g03669 424 Gene3D - 41 347 IPR036457 -
Tsu08g03669 424 SUPERFAMILY PP2C-like 41 347 IPR036457 -
Tsu08g03669 424 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Tsu08g03669 424 SMART PP2C_4 39 343 IPR001932 -
Tsu08g03669 424 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 32 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03669 Tsu-Chr8 54729222 54732659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03669 1 350 PP2C-type Phosphatase Gene Family AT3G06270 73.371 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03669 - - mtr:MTR_2g020970 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03669 08 54729222 54732659 Tsu08g03669 08 54729222 54732659 ECH
Tsu04g04167 04 50062524 50066136 Tsu08g03669 08 54729222 54732659 PCT