Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03661 ATGATTGTAAATGAGCATCCTGTTGGTACTGAATTGGTAATGAGTAATGCAATTGGTGATGaggaaattgatttttcttgtGATCCTTATATAGGGTTAGAGTTTTTTAATGCGGATGATGCACTTAAGTTTTATATATCGTATGCTAATCGAATGGGGTTTAAGGTTCGGATTGGTCAGCTATATCGATCGAGAACTAATGGATCGGTTTCTTCTCGAAGATATGTGTGCTCGAAGGAGGGACATCAGCTTAGCTCGAGAACTGGCTGTCCGGCGTTCATAAGGGTACAGTTAAATGATTCGGGAAAGTGGGTTGTTGATCATTTTCATAAGGATCATAAccataatcttgaaaatgaaagtgaaaatttCGCTCCAACGTTGCATTCGAATGGTGCTGCAGCTATTGATTCTTCTACTACTGAAGTCACTCGCAGGCCAAGGAAGAAAAAGATTGAAGTTGCCAATGATGAACCTATTTGTCCTTTTGGTGTTATTGATTTTAAGCGCCTGAGAAAGGAAGAACTTGAAGGACAGGCCAGAATCGAACCACATGTTGGTCAAGAGTTTAATACCCCTAATGAAGCCTACCAATTTTATCATGCTCATGCAGCATATTTGGGTTTTGGAATCCGAATTGGCCAATTGTTTCGCTCTAAAAATGACGGGTTGATTACATCACGACGCTTTGTGTGTTCAAAAGAAGGGTTTCAGCATCCTTCAAGAGTTGGTTGTAGGGCTTATTTAAGGATTAAGAGACAACCATCAGGAAAGTGGGTAGTTGACCGTCTTGAAAAAGATCATAATCATGATCTGGgccttgaaaaagaaaataagacaAAAAGTCTTCCTGCTTCTAACATTTTGACTGAGGAGGTAAATACTGAAATGGTGAATGGTGACATATTTAGGATAGATAATTACCCTGTCCTGAGAGGAGGTAGACAAAATCATATCAGAAGTGATTGGTACAACATGCTTTTGGAGtattttcaatcaaaacaaGCTGAAGATACAGGATTCTTTTATTCCATGGAAGTCGATAATGGTAATTGCATGAGCATATTCTGGGCCGACGGAAGATCTAGGTACTCATCTAGTCAGTTTGGTGATGTCCTCGTTGTAGACACATCTTATAGAAAAAGCGTCTATATGGTACCATTTGCTACTTTTGTTGGAGTTAACCACCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAAGAGTCTTTCACTTGGCTGTTTCAGACATGGCTAAGAGCAATGTCTGGCCGGCAGCCTCTGTCAGTAATAGCTGATCAAGACGTTCCAATCCAGAGGGCAATTGCAAAGGTCTTTCCAGTAACCTATCATCGCTTTTCGTTGTGGCAAATTAACGCAAAGGAACAAGAGCTCGCAGGTTTGATGGGTAATGTATTTACAAAAGATTACGAAAAGTGTGTTTACCTGAGCCAAACAGTCGACGAATTTGACACTGCATGGAATGCTCTACTCATCAAATATGGATTGAAGGACAATACTTGGCTAAAAGAAATGTATGAAAAGCGTGCATCCTGGGTTCCATTTTATTTAAAGGGCACATTTTGTGCTGGAATTCCTATGAAAGAAAGCATGGAATCATTCTTTGGTGGACTTTTAAATGGCCAAACACCTCTCGCAGAATTCATTGCACGGTACGAAAGAGGTCTTGAGCGACGTCGTGAAGGTGAAAGAAAAGAGGATTTTGATACTTCTAATTTTCAACCTTTTTTGCAAACAAAAGAACCCATAGAAGAACAATGTAGAAGGCTTTACACTCTTGcaatattcaaaatatttcaaaaagaacTTATGCAGTGCTATAGTTATCTTGGGTTTAAAATTTACGAAGAAGGACCTCTCAGCAGATATTTGGTCCGTAAGTGTGGACATGATGATATGGAGAAGTATGTAGTTACATTCAATGCATCCAATCTTGACATAAGTTGTAGCTGTCAGATGTTTGAATACGAAGGTGTTCTATGCAGACATGTGTTGAGGGTTTTCCAAATATTAGAATTAAGAGAAGTTCCTTCTCGCTACATCTTGCACCGATGGACAAGAAATGCCGAGGATGGTGTTTTTCCCGACAGAGAATCATGGAGTAGCTCTCAGGAGCTAAAAAGCTTGATGCTATGGAGTCTAAGAGAAACAGCATCTAAATACATTGATGCTGGTGCATCATCCATTGAAAAGTATAAACTTGCGTATGAAATTTTGCGAGAGGGTGGGAGAAAACTGTGTTGGCATAGGTGA 2289 0.3836 MIVNEHPVGTELVMSNAIGDEEIDFSCDPYIGLEFFNADDALKFYISYANRMGFKVRIGQLYRSRTNGSVSSRRYVCSKEGHQLSSRTGCPAFIRVQLNDSGKWVVDHFHKDHNHNLENESENFAPTLHSNGAAAIDSSTTEVTRRPRKKKIEVANDEPICPFGVIDFKRLRKEELEGQARIEPHVGQEFNTPNEAYQFYHAHAAYLGFGIRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCRAYLRIKRQPSGKWVVDRLEKDHNHDLGLEKENKTKSLPASNILTEEVNTEMVNGDIFRIDNYPVLRGGRQNHIRSDWYNMLLEYFQSKQAEDTGFFYSMEVDNGNCMSIFWADGRSRYSSSQFGDVLVVDTSYRKSVYMVPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRQPLSVIADQDVPIQRAIAKVFPVTYHRFSLWQINAKEQELAGLMGNVFTKDYEKCVYLSQTVDEFDTAWNALLIKYGLKDNTWLKEMYEKRASWVPFYLKGTFCAGIPMKESMESFFGGLLNGQTPLAEFIARYERGLERRREGERKEDFDTSNFQPFLQTKEPIEEQCRRLYTLAIFKIFQKELMQCYSYLGFKIYEEGPLSRYLVRKCGHDDMEKYVVTFNASNLDISCSCQMFEYEGVLCRHVLRVFQILELREVPSRYILHRWTRNAEDGVFPDRESWSSSQELKSLMLWSLRETASKYIDAGASSIEKYKLAYEILREGGRKLCWHR 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03661 762 Pfam SWIM zinc finger 648 681 IPR007527 GO:0008270
Tsu08g03661 762 Pfam FAR1 DNA-binding domain 198 272 IPR004330 -
Tsu08g03661 762 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Tsu08g03661 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 122 IPR031052 GO:0006355
Tsu08g03661 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 150 758 IPR031052 GO:0006355
Tsu08g03661 762 Pfam MULE transposase domain 372 465 IPR018289 -
Tsu08g03661 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 26 122 - -
Tsu08g03661 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 150 758 - -
Tsu08g03661 762 ProSiteProfiles Zinc finger SWIM-type profile. 648 684 IPR007527 GO:0008270
Tsu08g03661 762 SMART 26again6 659 686 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03661 Tsu-Chr8 54664024 54666958 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g03661 MULE 1e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03661 - - gmx:100816656 1299.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03661 08 54664024 54666958 Tsu08g03661 08 54664024 54666958 ECH