Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03645 ATGGCTTCTTTTGCTTTCTTCAGAAAACCCCTTATACTATCTTTCCATTTCATATCTCGTGTAACTTCTTCCACCGTTTCCCTCAACAACAATGCATCAACTCTTGTTTCTCTCCATAGATCCATGGCCACTTTCACGAGAacAAAGCCTCATCTTAATGTTGGCACCATTGGGCATGTAGATCATGGAAAAACCACATTAACTGCTGCCATTACAAAGGTACTAGCTGATGAAGGTAGAGCCAAGGCCATTGCTTTTGACGAAATCGACAAGGCTCCcgaggagaagaagagaggaattACTATTGCTACGGCTCATGTTGAGTATGAGACCTCAAAGAGGCATTATGCTCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATTACTGGAGCTGCACAAATGGATGGTGGAATCCTTGTGGTTTCTGCTCCAGATGGTCCGATGCCTCAAACAAAGGAACATATACTCCTCGCTCGTCAGGTTGGTGTGCCATCACTGGTATGTTTTCTAAATAAAGTAGATGCTGTCGATGATCCAGAGTTACTTGAACTTGTCGAAATGGAGCTTCGCGAACTACTTAATTTCTATAAATTCCCCGGGGATGATATCCCGATTGTGAGAGGTTCAGCTCTGTCTGCCTTGCAAGGGACTAATGAAGAACTTGGAAAGAAAGCTATCTTGAAACTAATGGATGCTGTCGATGAATATATTTCTGATCCAGTCCGTCAGCTTGACAAGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCTATTCAGGGGCGTGGAACTGTTGTCACTGGACGTATTGAACAAGGTACTATCAAAGTTGGTGAAGAGGTTGAAATATTAGGACTAACAAAGAGTGAACCTTTGAAGACTACTGTAACTGGTGTCGAAATGTTCAAGAAAATATTGGATCGAGGGCAAGCTGGTGATAATGTAGGACTTCTTGTACGAGGACTAAAACGAGATGATGTGCAGAGAGGAATGGTTATCACGAAGCCGGGTGCATTGAAAACATATAAGAAGTTTGAAGCAGAGATTTATGTCCTGTCAAAAGATGAAGGTGGCCGTCATACCGCTTTTTTCTCTAACTATATGCCTCAATTTTACCTGAGGACTGCAGACATTACTGGAAAGGTGCAGTTACCTGAAAATGTTAAGATGGTTATGCCTGGTGATAATGTGACCGCAACTTTTGAGCTGATATTACCTGTTCCTCTTGAATGCGGACAAAGATTTGCTTTGAGAGAGGGAGGCCGGACAGTTGGTGCAGGAGTCGTCTCCAAAGTGATTTCCTAG 1314 0.4186 MASFAFFRKPLILSFHFISRVTSSTVSLNNNASTLVSLHRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLADEGRAKAIAFDEIDKAPEEKKRGITIATAHVEYETSKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDDIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRIEQGTIKVGEEVEILGLTKSEPLKTTVTGVEMFKKILDRGQAGDNVGLLVRGLKRDDVQRGMVITKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYMPQFYLRTADITGKVQLPENVKMVMPGDNVTATFELILPVPLECGQRFALREGGRTVGAGVVSKVIS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03645 437 SUPERFAMILY Translation proteins 246 342 IPR009000 -
Tsu08g03645 437 Hamap Elongation factor Tu [tuf]. 40 437 IPR004541 GO:0003746|GO:0005525|GO:0006414
Tsu08g03645 437 Gene3D Translation factors 381 436 - -
Tsu08g03645 437 PRINTS GTP-binding elongation factor signature 97 105 IPR000795 GO:0003924|GO:0005525
Tsu08g03645 437 PRINTS GTP-binding elongation factor signature 117 127 IPR000795 GO:0003924|GO:0005525
Tsu08g03645 437 PRINTS GTP-binding elongation factor signature 170 179 IPR000795 GO:0003924|GO:0005525
Tsu08g03645 437 PRINTS GTP-binding elongation factor signature 53 66 IPR000795 GO:0003924|GO:0005525
Tsu08g03645 437 PRINTS GTP-binding elongation factor signature 133 144 IPR000795 GO:0003924|GO:0005525
Tsu08g03645 437 CDD EFTU_III 343 432 - -
Tsu08g03645 437 TIGRFAM EF-Tu: translation elongation factor Tu 41 436 IPR004541 GO:0003746|GO:0005525|GO:0006414
Tsu08g03645 437 Pfam Elongation factor Tu domain 2 266 337 IPR004161 GO:0005525
Tsu08g03645 437 CDD EF_Tu 50 244 IPR041709 -
Tsu08g03645 437 Gene3D - 41 244 IPR027417 -
Tsu08g03645 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 267 IPR027417 -
Tsu08g03645 437 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 346 437 IPR009001 -
Tsu08g03645 437 Gene3D Translation factors 247 377 - -
Tsu08g03645 437 PANTHER ELONGATION FACTOR TU-RELATED 26 437 - -
Tsu08g03645 437 Pfam Elongation factor Tu C-terminal domain 342 435 IPR004160 -
Tsu08g03645 437 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 90 105 IPR031157 -
Tsu08g03645 437 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 49 245 IPR000795 GO:0003924|GO:0005525
Tsu08g03645 437 CDD EFTU_II 252 340 IPR033720 -
Tsu08g03645 437 TIGRFAM small_GTP: small GTP-binding protein domain 53 189 IPR005225 GO:0005525
Tsu08g03645 437 PANTHER ELONGATION FACTOR TU 26 437 - -
Tsu08g03645 437 Pfam Elongation factor Tu GTP binding domain 49 242 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03645 Tsu-Chr8 54533913 54536944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03645 47 435 Eukaryotic Initiation Factors Gene Family AT5G60390 29.977 6.31e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03645 K02358 - gmx:102667962 745.732